Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1726 and Dsui_1727 overlap by 8 nucleotides Dsui_1727 and Dsui_1728 are separated by 4 nucleotides Dsui_1728 and Dsui_1729 are separated by 75 nucleotides Dsui_1729 and Dsui_1730 are separated by 37 nucleotides Dsui_1730 and Dsui_1731 are separated by 108 nucleotides
Dsui_1726: Dsui_1726 - RNA polymerase sigma factor, FliA/WhiG family, at 1,817,768 to 1,818,508
_1726
Dsui_1727: Dsui_1727 - flagellar motor component, at 1,818,501 to 1,819,241
_1727
Dsui_1728: Dsui_1728 - flagellar motor protein, at 1,819,246 to 1,820,097
_1728
Dsui_1729: Dsui_1729 - flagellar biosynthesis/type III secretory pathway chaperone, at 1,820,173 to 1,820,640
_1729
Dsui_1730: Dsui_1730 - flagellar biosynthesis anti-sigma factor FlgM, at 1,820,678 to 1,820,968
_1730
Dsui_1731: Dsui_1731 - flagella basal body P-ring formation protein FlgA, at 1,821,077 to 1,821,796
_1731
Position (kb)
1819
1820
1821 Strain fitness (log2 ratio)
-2
-1
0
1 at 1818.312 kb on + strand, within Dsui_1726 at 1818.357 kb on + strand, within Dsui_1726 at 1818.365 kb on - strand, within Dsui_1726 at 1818.447 kb on - strand at 1818.448 kb on - strand at 1818.609 kb on - strand, within Dsui_1727 at 1818.628 kb on - strand, within Dsui_1727 at 1818.660 kb on - strand at 1818.703 kb on - strand, within Dsui_1727 at 1818.722 kb on + strand, within Dsui_1727 at 1818.831 kb on + strand, within Dsui_1727 at 1818.879 kb on + strand, within Dsui_1727 at 1818.880 kb on + strand, within Dsui_1727 at 1818.991 kb on - strand, within Dsui_1727 at 1818.998 kb on - strand, within Dsui_1727 at 1819.220 kb on + strand at 1819.378 kb on + strand, within Dsui_1728 at 1819.383 kb on + strand, within Dsui_1728 at 1819.502 kb on - strand, within Dsui_1728 at 1819.610 kb on + strand, within Dsui_1728 at 1819.613 kb on - strand, within Dsui_1728 at 1819.620 kb on + strand, within Dsui_1728 at 1819.678 kb on + strand, within Dsui_1728 at 1819.686 kb on - strand, within Dsui_1728 at 1819.761 kb on - strand, within Dsui_1728 at 1819.814 kb on + strand, within Dsui_1728 at 1819.839 kb on - strand, within Dsui_1728 at 1819.841 kb on + strand, within Dsui_1728 at 1819.846 kb on + strand, within Dsui_1728 at 1819.959 kb on - strand, within Dsui_1728 at 1820.103 kb on + strand at 1820.110 kb on - strand at 1820.186 kb on + strand at 1820.235 kb on - strand, within Dsui_1729 at 1820.239 kb on + strand, within Dsui_1729 at 1820.247 kb on - strand, within Dsui_1729 at 1820.247 kb on - strand, within Dsui_1729 at 1820.286 kb on + strand, within Dsui_1729 at 1820.341 kb on + strand, within Dsui_1729 at 1820.358 kb on + strand, within Dsui_1729 at 1820.455 kb on + strand, within Dsui_1729 at 1820.467 kb on + strand, within Dsui_1729 at 1820.676 kb on + strand at 1820.684 kb on - strand at 1820.777 kb on - strand, within Dsui_1730 at 1820.777 kb on - strand, within Dsui_1730 at 1820.814 kb on + strand, within Dsui_1730 at 1820.894 kb on - strand, within Dsui_1730 at 1820.992 kb on - strand at 1821.008 kb on + strand at 1821.008 kb on + strand at 1821.016 kb on - strand at 1821.084 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 1,818,312 + Dsui_1726 0.73 +0.8 1,818,357 + Dsui_1726 0.79 +0.1 1,818,365 - Dsui_1726 0.81 +0.8 1,818,447 - -0.2 1,818,448 - -0.2 1,818,609 - Dsui_1727 0.15 -1.8 1,818,628 - Dsui_1727 0.17 -0.2 1,818,660 - +0.8 1,818,703 - Dsui_1727 0.27 -0.2 1,818,722 + Dsui_1727 0.30 +0.0 1,818,831 + Dsui_1727 0.45 +0.8 1,818,879 + Dsui_1727 0.51 -0.2 1,818,880 + Dsui_1727 0.51 +0.7 1,818,991 - Dsui_1727 0.66 -0.2 1,818,998 - Dsui_1727 0.67 -1.2 1,819,220 + -0.0 1,819,378 + Dsui_1728 0.15 -0.1 1,819,383 + Dsui_1728 0.16 -0.2 1,819,502 - Dsui_1728 0.30 +0.8 1,819,610 + Dsui_1728 0.43 -0.1 1,819,613 - Dsui_1728 0.43 +0.8 1,819,620 + Dsui_1728 0.44 -0.0 1,819,678 + Dsui_1728 0.51 +0.8 1,819,686 - Dsui_1728 0.52 -0.2 1,819,761 - Dsui_1728 0.60 -0.5 1,819,814 + Dsui_1728 0.67 +0.2 1,819,839 - Dsui_1728 0.70 -1.6 1,819,841 + Dsui_1728 0.70 +0.7 1,819,846 + Dsui_1728 0.70 +0.0 1,819,959 - Dsui_1728 0.84 -0.1 1,820,103 + -0.0 1,820,110 - -0.2 1,820,186 + +0.8 1,820,235 - Dsui_1729 0.13 +0.2 1,820,239 + Dsui_1729 0.14 -0.3 1,820,247 - Dsui_1729 0.16 -0.2 1,820,247 - Dsui_1729 0.16 -0.1 1,820,286 + Dsui_1729 0.24 -0.3 1,820,341 + Dsui_1729 0.36 +0.3 1,820,358 + Dsui_1729 0.40 -1.3 1,820,455 + Dsui_1729 0.60 +0.0 1,820,467 + Dsui_1729 0.63 -0.1 1,820,676 + +0.8 1,820,684 - +0.6 1,820,777 - Dsui_1730 0.34 -2.3 1,820,777 - Dsui_1730 0.34 -0.9 1,820,814 + Dsui_1730 0.47 -0.8 1,820,894 - Dsui_1730 0.74 -0.8 1,820,992 - -0.5 1,821,008 + +0.8 1,821,008 + -0.8 1,821,016 - -0.8 1,821,084 - +0.1
Or see this region's nucleotide sequence