Strain Fitness in Dechlorosoma suillum PS around Dsui_1728

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1726 and Dsui_1727 overlap by 8 nucleotidesDsui_1727 and Dsui_1728 are separated by 4 nucleotidesDsui_1728 and Dsui_1729 are separated by 75 nucleotidesDsui_1729 and Dsui_1730 are separated by 37 nucleotidesDsui_1730 and Dsui_1731 are separated by 108 nucleotides Dsui_1726: Dsui_1726 - RNA polymerase sigma factor, FliA/WhiG family, at 1,817,768 to 1,818,508 _1726 Dsui_1727: Dsui_1727 - flagellar motor component, at 1,818,501 to 1,819,241 _1727 Dsui_1728: Dsui_1728 - flagellar motor protein, at 1,819,246 to 1,820,097 _1728 Dsui_1729: Dsui_1729 - flagellar biosynthesis/type III secretory pathway chaperone, at 1,820,173 to 1,820,640 _1729 Dsui_1730: Dsui_1730 - flagellar biosynthesis anti-sigma factor FlgM, at 1,820,678 to 1,820,968 _1730 Dsui_1731: Dsui_1731 - flagella basal body P-ring formation protein FlgA, at 1,821,077 to 1,821,796 _1731 Position (kb) 1819 1820 1821Strain fitness (log2 ratio) -2 -1 0 1at 1818.312 kb on + strand, within Dsui_1726at 1818.357 kb on + strand, within Dsui_1726at 1818.365 kb on - strand, within Dsui_1726at 1818.447 kb on - strandat 1818.448 kb on - strandat 1818.609 kb on - strand, within Dsui_1727at 1818.628 kb on - strand, within Dsui_1727at 1818.660 kb on - strandat 1818.703 kb on - strand, within Dsui_1727at 1818.722 kb on + strand, within Dsui_1727at 1818.831 kb on + strand, within Dsui_1727at 1818.879 kb on + strand, within Dsui_1727at 1818.880 kb on + strand, within Dsui_1727at 1818.991 kb on - strand, within Dsui_1727at 1818.998 kb on - strand, within Dsui_1727at 1819.220 kb on + strandat 1819.378 kb on + strand, within Dsui_1728at 1819.383 kb on + strand, within Dsui_1728at 1819.502 kb on - strand, within Dsui_1728at 1819.610 kb on + strand, within Dsui_1728at 1819.613 kb on - strand, within Dsui_1728at 1819.620 kb on + strand, within Dsui_1728at 1819.678 kb on + strand, within Dsui_1728at 1819.686 kb on - strand, within Dsui_1728at 1819.761 kb on - strand, within Dsui_1728at 1819.814 kb on + strand, within Dsui_1728at 1819.839 kb on - strand, within Dsui_1728at 1819.841 kb on + strand, within Dsui_1728at 1819.846 kb on + strand, within Dsui_1728at 1819.959 kb on - strand, within Dsui_1728at 1820.103 kb on + strandat 1820.110 kb on - strandat 1820.186 kb on + strandat 1820.235 kb on - strand, within Dsui_1729at 1820.239 kb on + strand, within Dsui_1729at 1820.247 kb on - strand, within Dsui_1729at 1820.247 kb on - strand, within Dsui_1729at 1820.286 kb on + strand, within Dsui_1729at 1820.341 kb on + strand, within Dsui_1729at 1820.358 kb on + strand, within Dsui_1729at 1820.455 kb on + strand, within Dsui_1729at 1820.467 kb on + strand, within Dsui_1729at 1820.676 kb on + strandat 1820.684 kb on - strandat 1820.777 kb on - strand, within Dsui_1730at 1820.777 kb on - strand, within Dsui_1730at 1820.814 kb on + strand, within Dsui_1730at 1820.894 kb on - strand, within Dsui_1730at 1820.992 kb on - strandat 1821.008 kb on + strandat 1821.008 kb on + strandat 1821.016 kb on - strandat 1821.084 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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1,818,312 + Dsui_1726 0.73 +0.8
1,818,357 + Dsui_1726 0.79 +0.1
1,818,365 - Dsui_1726 0.81 +0.8
1,818,447 - -0.2
1,818,448 - -0.2
1,818,609 - Dsui_1727 0.15 -1.8
1,818,628 - Dsui_1727 0.17 -0.2
1,818,660 - +0.8
1,818,703 - Dsui_1727 0.27 -0.2
1,818,722 + Dsui_1727 0.30 +0.0
1,818,831 + Dsui_1727 0.45 +0.8
1,818,879 + Dsui_1727 0.51 -0.2
1,818,880 + Dsui_1727 0.51 +0.7
1,818,991 - Dsui_1727 0.66 -0.2
1,818,998 - Dsui_1727 0.67 -1.2
1,819,220 + -0.0
1,819,378 + Dsui_1728 0.15 -0.1
1,819,383 + Dsui_1728 0.16 -0.2
1,819,502 - Dsui_1728 0.30 +0.8
1,819,610 + Dsui_1728 0.43 -0.1
1,819,613 - Dsui_1728 0.43 +0.8
1,819,620 + Dsui_1728 0.44 -0.0
1,819,678 + Dsui_1728 0.51 +0.8
1,819,686 - Dsui_1728 0.52 -0.2
1,819,761 - Dsui_1728 0.60 -0.5
1,819,814 + Dsui_1728 0.67 +0.2
1,819,839 - Dsui_1728 0.70 -1.6
1,819,841 + Dsui_1728 0.70 +0.7
1,819,846 + Dsui_1728 0.70 +0.0
1,819,959 - Dsui_1728 0.84 -0.1
1,820,103 + -0.0
1,820,110 - -0.2
1,820,186 + +0.8
1,820,235 - Dsui_1729 0.13 +0.2
1,820,239 + Dsui_1729 0.14 -0.3
1,820,247 - Dsui_1729 0.16 -0.2
1,820,247 - Dsui_1729 0.16 -0.1
1,820,286 + Dsui_1729 0.24 -0.3
1,820,341 + Dsui_1729 0.36 +0.3
1,820,358 + Dsui_1729 0.40 -1.3
1,820,455 + Dsui_1729 0.60 +0.0
1,820,467 + Dsui_1729 0.63 -0.1
1,820,676 + +0.8
1,820,684 - +0.6
1,820,777 - Dsui_1730 0.34 -2.3
1,820,777 - Dsui_1730 0.34 -0.9
1,820,814 + Dsui_1730 0.47 -0.8
1,820,894 - Dsui_1730 0.74 -0.8
1,820,992 - -0.5
1,821,008 + +0.8
1,821,008 + -0.8
1,821,016 - -0.8
1,821,084 - +0.1

Or see this region's nucleotide sequence