Strain Fitness in Dechlorosoma suillum PS around Dsui_1709

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1708 and Dsui_1709 are separated by 16 nucleotidesDsui_1709 and Dsui_1710 are separated by 70 nucleotides Dsui_1708: Dsui_1708 - chemotaxis protein histidine kinase-like protein, at 1,794,418 to 1,796,877 _1708 Dsui_1709: Dsui_1709 - chemotaxis signal transduction protein, at 1,796,894 to 1,797,397 _1709 Dsui_1710: Dsui_1710 - PAS domain S-box, at 1,797,468 to 1,800,335 _1710 Position (kb) 1796 1797 1798Strain fitness (log2 ratio) -2 -1 0 1at 1795.996 kb on + strand, within Dsui_1708at 1796.056 kb on + strand, within Dsui_1708at 1796.230 kb on - strandat 1796.263 kb on - strand, within Dsui_1708at 1796.324 kb on + strand, within Dsui_1708at 1796.373 kb on - strand, within Dsui_1708at 1796.538 kb on + strand, within Dsui_1708at 1796.590 kb on - strandat 1796.643 kb on - strandat 1796.672 kb on + strandat 1796.680 kb on - strandat 1796.681 kb on + strandat 1796.710 kb on + strandat 1796.741 kb on - strandat 1796.749 kb on - strandat 1796.764 kb on + strandat 1796.809 kb on + strandat 1796.958 kb on + strand, within Dsui_1709at 1796.966 kb on - strand, within Dsui_1709at 1796.983 kb on - strandat 1797.125 kb on - strand, within Dsui_1709at 1797.135 kb on - strand, within Dsui_1709at 1797.147 kb on + strand, within Dsui_1709at 1797.183 kb on + strand, within Dsui_1709at 1797.233 kb on - strandat 1797.341 kb on - strandat 1797.351 kb on - strandat 1797.351 kb on - strandat 1797.394 kb on - strandat 1797.399 kb on - strandat 1797.476 kb on - strandat 1797.501 kb on - strandat 1797.557 kb on - strandat 1797.609 kb on - strandat 1797.671 kb on + strandat 1797.679 kb on - strandat 1797.698 kb on + strandat 1797.760 kb on + strand, within Dsui_1710at 1797.797 kb on + strand, within Dsui_1710at 1798.072 kb on - strand, within Dsui_1710at 1798.137 kb on - strand, within Dsui_1710at 1798.206 kb on + strand, within Dsui_1710at 1798.229 kb on + strand, within Dsui_1710at 1798.297 kb on - strand, within Dsui_1710at 1798.298 kb on - strand, within Dsui_1710at 1798.366 kb on + strand, within Dsui_1710at 1798.374 kb on - strand, within Dsui_1710

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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1,795,996 + Dsui_1708 0.64 -0.2
1,796,056 + Dsui_1708 0.67 +0.8
1,796,230 - +0.7
1,796,263 - Dsui_1708 0.75 +0.7
1,796,324 + Dsui_1708 0.77 -0.8
1,796,373 - Dsui_1708 0.79 -0.9
1,796,538 + Dsui_1708 0.86 +0.0
1,796,590 - -0.3
1,796,643 - -0.3
1,796,672 + +0.3
1,796,680 - -1.6
1,796,681 + -0.8
1,796,710 + -0.8
1,796,741 - +0.7
1,796,749 - -0.3
1,796,764 + +0.3
1,796,809 + -0.2
1,796,958 + Dsui_1709 0.13 -0.8
1,796,966 - Dsui_1709 0.14 +0.7
1,796,983 - +0.7
1,797,125 - Dsui_1709 0.46 -2.7
1,797,135 - Dsui_1709 0.48 -0.3
1,797,147 + Dsui_1709 0.50 -0.2
1,797,183 + Dsui_1709 0.57 -0.6
1,797,233 - -0.3
1,797,341 - +0.7
1,797,351 - +0.7
1,797,351 - +0.7
1,797,394 - +0.7
1,797,399 - -0.3
1,797,476 - +0.7
1,797,501 - -1.6
1,797,557 - -1.3
1,797,609 - +0.7
1,797,671 + -0.3
1,797,679 - -0.3
1,797,698 + -0.4
1,797,760 + Dsui_1710 0.10 +0.3
1,797,797 + Dsui_1710 0.11 -1.3
1,798,072 - Dsui_1710 0.21 -0.3
1,798,137 - Dsui_1710 0.23 +0.7
1,798,206 + Dsui_1710 0.26 -0.9
1,798,229 + Dsui_1710 0.27 -0.8
1,798,297 - Dsui_1710 0.29 -1.3
1,798,298 - Dsui_1710 0.29 -0.3
1,798,366 + Dsui_1710 0.31 +0.4
1,798,374 - Dsui_1710 0.32 -2.7

Or see this region's nucleotide sequence