Strain Fitness in Dechlorosoma suillum PS around Dsui_1699

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1697 and Dsui_1698 are separated by 120 nucleotidesDsui_1698 and Dsui_1699 are separated by 101 nucleotidesDsui_1699 and Dsui_1700 are separated by 12 nucleotidesDsui_1700 and Dsui_1701 are separated by 82 nucleotides Dsui_1697: Dsui_1697 - putative soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 1,785,564 to 1,787,000 _1697 Dsui_1698: Dsui_1698 - tRNA-Ser, at 1,787,121 to 1,787,213 _1698 Dsui_1699: Dsui_1699 - cation/cationic drug transporter, at 1,787,315 to 1,787,671 _1699 Dsui_1700: Dsui_1700 - putative membrane protein, at 1,787,684 to 1,788,394 _1700 Dsui_1701: Dsui_1701 - restriction endonuclease, at 1,788,477 to 1,789,109 _1701 Position (kb) 1787 1788Strain fitness (log2 ratio) -2 -1 0 1at 1786.365 kb on - strand, within Dsui_1697at 1786.459 kb on - strand, within Dsui_1697at 1786.579 kb on - strand, within Dsui_1697at 1786.587 kb on - strand, within Dsui_1697at 1786.946 kb on - strandat 1786.946 kb on - strandat 1786.947 kb on - strandat 1786.978 kb on - strandat 1786.996 kb on - strandat 1787.080 kb on - strandat 1787.280 kb on + strandat 1787.356 kb on + strand, within Dsui_1699at 1787.364 kb on - strandat 1787.374 kb on - strand, within Dsui_1699at 1787.384 kb on + strand, within Dsui_1699at 1787.386 kb on + strand, within Dsui_1699at 1787.397 kb on + strand, within Dsui_1699at 1787.449 kb on - strand, within Dsui_1699at 1787.522 kb on + strand, within Dsui_1699at 1787.522 kb on + strand, within Dsui_1699at 1787.530 kb on - strand, within Dsui_1699at 1787.530 kb on - strand, within Dsui_1699at 1787.530 kb on - strand, within Dsui_1699at 1787.535 kb on - strand, within Dsui_1699at 1787.554 kb on - strand, within Dsui_1699at 1787.622 kb on + strand, within Dsui_1699at 1787.636 kb on - strandat 1787.652 kb on + strandat 1787.775 kb on + strand, within Dsui_1700at 1787.793 kb on + strand, within Dsui_1700at 1787.799 kb on + strand, within Dsui_1700at 1788.077 kb on - strand, within Dsui_1700at 1788.096 kb on + strand, within Dsui_1700at 1788.109 kb on - strand, within Dsui_1700at 1788.165 kb on + strand, within Dsui_1700at 1788.171 kb on + strandat 1788.173 kb on - strand, within Dsui_1700at 1788.179 kb on - strand, within Dsui_1700at 1788.249 kb on + strandat 1788.257 kb on - strand, within Dsui_1700at 1788.348 kb on - strandat 1788.372 kb on - strandat 1788.382 kb on - strandat 1788.449 kb on + strandat 1788.482 kb on - strandat 1788.539 kb on - strandat 1788.540 kb on - strandat 1788.544 kb on - strand, within Dsui_1701at 1788.599 kb on + strand, within Dsui_1701at 1788.602 kb on - strand, within Dsui_1701

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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1,786,365 - Dsui_1697 0.56 -1.6
1,786,459 - Dsui_1697 0.62 +0.7
1,786,579 - Dsui_1697 0.71 +0.6
1,786,587 - Dsui_1697 0.71 -1.3
1,786,946 - -1.1
1,786,946 - -0.8
1,786,947 - -1.1
1,786,978 - -0.3
1,786,996 - -0.9
1,787,080 - -1.3
1,787,280 + -1.3
1,787,356 + Dsui_1699 0.11 -1.2
1,787,364 - +0.7
1,787,374 - Dsui_1699 0.17 -0.9
1,787,384 + Dsui_1699 0.19 -2.1
1,787,386 + Dsui_1699 0.20 -1.4
1,787,397 + Dsui_1699 0.23 -1.7
1,787,449 - Dsui_1699 0.38 -0.3
1,787,522 + Dsui_1699 0.58 -2.3
1,787,522 + Dsui_1699 0.58 -0.9
1,787,530 - Dsui_1699 0.60 -2.3
1,787,530 - Dsui_1699 0.60 +0.7
1,787,530 - Dsui_1699 0.60 -0.3
1,787,535 - Dsui_1699 0.62 +0.7
1,787,554 - Dsui_1699 0.67 -0.3
1,787,622 + Dsui_1699 0.86 -1.5
1,787,636 - -1.6
1,787,652 + -0.0
1,787,775 + Dsui_1700 0.13 -0.3
1,787,793 + Dsui_1700 0.15 +0.7
1,787,799 + Dsui_1700 0.16 -0.3
1,788,077 - Dsui_1700 0.55 -2.5
1,788,096 + Dsui_1700 0.58 -0.3
1,788,109 - Dsui_1700 0.60 -1.3
1,788,165 + Dsui_1700 0.68 -1.3
1,788,171 + +0.7
1,788,173 - Dsui_1700 0.69 -1.3
1,788,179 - Dsui_1700 0.70 -1.7
1,788,249 + +0.7
1,788,257 - Dsui_1700 0.81 -0.3
1,788,348 - +0.4
1,788,372 - +0.1
1,788,382 - -0.9
1,788,449 + +0.7
1,788,482 - +0.7
1,788,539 - -0.9
1,788,540 - -1.9
1,788,544 - Dsui_1701 0.11 +0.1
1,788,599 + Dsui_1701 0.19 -0.9
1,788,602 - Dsui_1701 0.20 +0.7

Or see this region's nucleotide sequence