Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1689 and Dsui_1690 are separated by 155 nucleotides Dsui_1690 and Dsui_1691 are separated by 49 nucleotides Dsui_1691 and Dsui_1692 overlap by 1 nucleotides
Dsui_1689: Dsui_1689 - thioredoxin-disulfide reductase, at 1,776,432 to 1,777,391
_1689
Dsui_1690: Dsui_1690 - cAMP-binding protein, at 1,777,547 to 1,778,206
_1690
Dsui_1691: Dsui_1691 - DNA segregation ATPase, FtsK/SpoIIIE family, at 1,778,256 to 1,780,571
_1691
Dsui_1692: Dsui_1692 - periplasmic chaperone LolA, at 1,780,571 to 1,781,203
_1692
Position (kb)
1778
1779
1780
1781 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1777.401 kb on - strand at 1777.511 kb on + strand at 1777.519 kb on - strand at 1777.545 kb on + strand at 1777.560 kb on - strand at 1777.562 kb on + strand at 1777.565 kb on - strand at 1777.570 kb on - strand at 1777.628 kb on + strand, within Dsui_1690 at 1777.633 kb on + strand, within Dsui_1690 at 1777.722 kb on - strand, within Dsui_1690 at 1777.724 kb on + strand, within Dsui_1690 at 1777.736 kb on - strand, within Dsui_1690 at 1777.788 kb on - strand, within Dsui_1690 at 1777.798 kb on - strand, within Dsui_1690 at 1777.944 kb on + strand, within Dsui_1690 at 1778.070 kb on + strand, within Dsui_1690 at 1778.070 kb on + strand, within Dsui_1690 at 1778.092 kb on - strand, within Dsui_1690 at 1778.235 kb on + strand at 1778.235 kb on + strand at 1778.235 kb on + strand at 1778.235 kb on + strand at 1781.206 kb on + strand at 1781.256 kb on + strand at 1781.267 kb on + strand at 1781.335 kb on + strand at 1781.374 kb on + strand at 1781.447 kb on - strand at 1781.449 kb on + strand at 1781.449 kb on - strand at 1781.481 kb on + strand at 1781.487 kb on - strand at 1781.524 kb on + strand at 1781.533 kb on - strand at 1781.533 kb on - strand at 1781.535 kb on + strand at 1781.535 kb on + strand at 1781.543 kb on - strand at 1781.569 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 1,777,401 - -3.8 1,777,511 + -0.9 1,777,519 - +2.3 1,777,545 + -0.3 1,777,560 - -0.9 1,777,562 + +0.0 1,777,565 - -1.3 1,777,570 - -2.1 1,777,628 + Dsui_1690 0.12 -0.6 1,777,633 + Dsui_1690 0.13 -0.6 1,777,722 - Dsui_1690 0.27 -1.9 1,777,724 + Dsui_1690 0.27 -0.8 1,777,736 - Dsui_1690 0.29 +0.7 1,777,788 - Dsui_1690 0.37 -3.8 1,777,798 - Dsui_1690 0.38 -1.9 1,777,944 + Dsui_1690 0.60 -0.5 1,778,070 + Dsui_1690 0.79 -1.1 1,778,070 + Dsui_1690 0.79 -0.5 1,778,092 - Dsui_1690 0.83 +0.7 1,778,235 + -3.2 1,778,235 + -3.0 1,778,235 + -1.2 1,778,235 + -0.3 1,781,206 + +0.6 1,781,256 + -1.1 1,781,267 + -0.8 1,781,335 + -1.0 1,781,374 + -1.2 1,781,447 - +0.7 1,781,449 + -2.6 1,781,449 - -1.9 1,781,481 + -2.6 1,781,487 - +0.7 1,781,524 + -1.8 1,781,533 - -1.3 1,781,533 - -0.3 1,781,535 + -0.7 1,781,535 + +0.7 1,781,543 - -0.9 1,781,569 + -3.6
Or see this region's nucleotide sequence