Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1680 and Dsui_1681 are separated by 250 nucleotides Dsui_1681 and Dsui_1682 overlap by 17 nucleotides Dsui_1682 and Dsui_1683 are separated by 0 nucleotides Dsui_1683 and Dsui_1684 are separated by 6 nucleotides
Dsui_1680: Dsui_1680 - TonB-dependent heme/hemoglobin receptor family protein/TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein, at 1,767,695 to 1,770,007
_1680
Dsui_1681: Dsui_1681 - hemin uptake protein, at 1,770,258 to 1,770,446
_1681
Dsui_1682: Dsui_1682 - biopolymer transport protein, at 1,770,430 to 1,770,861
_1682
Dsui_1683: Dsui_1683 - biopolymer transport protein, at 1,770,862 to 1,771,605
_1683
Dsui_1684: Dsui_1684 - TonB family protein, at 1,771,612 to 1,772,271
_1684
Position (kb)
1770
1771 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1769.443 kb on + strand, within Dsui_1680 at 1769.488 kb on + strand, within Dsui_1680 at 1769.488 kb on + strand, within Dsui_1680 at 1769.641 kb on + strand, within Dsui_1680 at 1769.674 kb on - strand, within Dsui_1680 at 1769.698 kb on + strand, within Dsui_1680 at 1769.698 kb on + strand, within Dsui_1680 at 1769.780 kb on - strand at 1769.908 kb on - strand at 1770.167 kb on - strand at 1770.211 kb on - strand at 1770.217 kb on + strand at 1770.248 kb on + strand at 1770.249 kb on - strand at 1770.449 kb on - strand at 1770.449 kb on - strand at 1770.484 kb on - strand, within Dsui_1682 at 1771.605 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 1,769,443 + Dsui_1680 0.76 +0.7 1,769,488 + Dsui_1680 0.78 -0.3 1,769,488 + Dsui_1680 0.78 +0.7 1,769,641 + Dsui_1680 0.84 +0.7 1,769,674 - Dsui_1680 0.86 -2.1 1,769,698 + Dsui_1680 0.87 -0.9 1,769,698 + Dsui_1680 0.87 +0.7 1,769,780 - -3.5 1,769,908 - -1.9 1,770,167 - -0.4 1,770,211 - -0.5 1,770,217 + +0.7 1,770,248 + -1.6 1,770,249 - -0.6 1,770,449 - -0.4 1,770,449 - +0.1 1,770,484 - Dsui_1682 0.12 -1.3 1,771,605 - -1.9
Or see this region's nucleotide sequence