Strain Fitness in Dechlorosoma suillum PS around Dsui_1607

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1606 and Dsui_1607 are separated by 102 nucleotidesDsui_1607 and Dsui_1608 are separated by 63 nucleotidesDsui_1608 and Dsui_1609 are separated by 49 nucleotides Dsui_1606: Dsui_1606 - periplasmic serine protease, Do/DeqQ family, at 1,689,759 to 1,691,252 _1606 Dsui_1607: Dsui_1607 - putative membrane-associated protein, at 1,691,355 to 1,692,332 _1607 Dsui_1608: Dsui_1608 - hypothetical protein, at 1,692,396 to 1,692,704 _1608 Dsui_1609: Dsui_1609 - Thiopurine S-methyltransferase (TPMT), at 1,692,754 to 1,693,371 _1609 Position (kb) 1691 1692 1693Strain fitness (log2 ratio) -3 -2 -1 0 1at 1690.394 kb on - strandat 1690.434 kb on - strand, within Dsui_1606at 1690.711 kb on + strand, within Dsui_1606at 1690.837 kb on + strand, within Dsui_1606at 1690.856 kb on + strand, within Dsui_1606at 1690.997 kb on + strand, within Dsui_1606at 1691.048 kb on - strandat 1691.208 kb on - strandat 1691.262 kb on + strandat 1691.270 kb on - strandat 1691.324 kb on + strandat 1691.687 kb on + strand, within Dsui_1607at 1691.783 kb on - strand, within Dsui_1607at 1691.936 kb on + strand, within Dsui_1607at 1691.962 kb on - strand, within Dsui_1607at 1692.391 kb on + strandat 1692.519 kb on - strandat 1692.589 kb on + strandat 1692.658 kb on + strandat 1692.668 kb on + strandat 1692.758 kb on + strandat 1692.849 kb on - strand, within Dsui_1609at 1692.929 kb on + strand, within Dsui_1609at 1692.956 kb on + strand, within Dsui_1609at 1692.985 kb on + strand, within Dsui_1609at 1692.985 kb on + strand, within Dsui_1609

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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1,690,394 - +0.7
1,690,434 - Dsui_1606 0.45 -0.3
1,690,711 + Dsui_1606 0.64 -0.9
1,690,837 + Dsui_1606 0.72 -0.6
1,690,856 + Dsui_1606 0.73 -0.2
1,690,997 + Dsui_1606 0.83 -0.8
1,691,048 - +0.7
1,691,208 - -0.9
1,691,262 + -0.3
1,691,270 - +0.7
1,691,324 + -2.9
1,691,687 + Dsui_1607 0.34 -0.9
1,691,783 - Dsui_1607 0.44 -0.9
1,691,936 + Dsui_1607 0.59 -2.5
1,691,962 - Dsui_1607 0.62 -0.9
1,692,391 + -2.1
1,692,519 - +0.7
1,692,589 + -0.3
1,692,658 + +0.7
1,692,668 + +0.7
1,692,758 + -0.3
1,692,849 - Dsui_1609 0.15 -1.3
1,692,929 + Dsui_1609 0.28 -0.3
1,692,956 + Dsui_1609 0.33 +0.7
1,692,985 + Dsui_1609 0.37 -0.3
1,692,985 + Dsui_1609 0.37 +0.7

Or see this region's nucleotide sequence