Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1577 and Dsui_1578 are separated by 20 nucleotides Dsui_1578 and Dsui_1579 are separated by 214 nucleotides
Dsui_1577: Dsui_1577 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 1,650,574 to 1,652,241
_1577
Dsui_1578: Dsui_1578 - pyruvate dehydrogenase E1 component, homodimeric type, at 1,652,262 to 1,654,934
_1578
Dsui_1579: Dsui_1579 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,655,149 to 1,656,357
_1579
Position (kb)
1652
1653
1654
1655 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1651.469 kb on - strand, within Dsui_1577 at 1652.161 kb on - strand at 1652.268 kb on + strand at 1652.292 kb on + strand at 1652.302 kb on + strand at 1652.388 kb on - strand at 1652.608 kb on - strand, within Dsui_1578 at 1652.886 kb on - strand, within Dsui_1578 at 1653.088 kb on + strand, within Dsui_1578 at 1653.106 kb on - strand, within Dsui_1578 at 1653.279 kb on + strand, within Dsui_1578 at 1653.294 kb on + strand, within Dsui_1578 at 1653.480 kb on - strand, within Dsui_1578 at 1653.646 kb on + strand, within Dsui_1578 at 1653.788 kb on - strand, within Dsui_1578 at 1653.857 kb on - strand, within Dsui_1578 at 1654.017 kb on + strand, within Dsui_1578 at 1654.105 kb on + strand, within Dsui_1578 at 1654.248 kb on + strand, within Dsui_1578 at 1654.389 kb on - strand, within Dsui_1578 at 1654.408 kb on + strand, within Dsui_1578 at 1654.781 kb on - strand at 1654.837 kb on - strand at 1654.985 kb on - strand at 1655.023 kb on - strand at 1655.073 kb on - strand at 1655.073 kb on - strand at 1655.083 kb on - strand at 1655.091 kb on - strand at 1655.155 kb on - strand at 1655.198 kb on + strand at 1655.203 kb on + strand at 1655.264 kb on - strand at 1655.342 kb on - strand, within Dsui_1579 at 1655.400 kb on - strand, within Dsui_1579 at 1655.405 kb on + strand, within Dsui_1579 at 1655.478 kb on - strand, within Dsui_1579 at 1655.523 kb on + strand, within Dsui_1579 at 1655.536 kb on - strand, within Dsui_1579 at 1655.705 kb on + strand at 1655.722 kb on - strand, within Dsui_1579 at 1655.732 kb on - strand, within Dsui_1579 at 1655.916 kb on - strand, within Dsui_1579
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 1,651,469 - Dsui_1577 0.54 -3.5 1,652,161 - -2.9 1,652,268 + +0.7 1,652,292 + -1.3 1,652,302 + +0.7 1,652,388 - -2.1 1,652,608 - Dsui_1578 0.13 -1.8 1,652,886 - Dsui_1578 0.23 -3.1 1,653,088 + Dsui_1578 0.31 +0.7 1,653,106 - Dsui_1578 0.32 -2.9 1,653,279 + Dsui_1578 0.38 +0.7 1,653,294 + Dsui_1578 0.39 +0.7 1,653,480 - Dsui_1578 0.46 -2.8 1,653,646 + Dsui_1578 0.52 -0.3 1,653,788 - Dsui_1578 0.57 -2.8 1,653,857 - Dsui_1578 0.60 -2.0 1,654,017 + Dsui_1578 0.66 +0.7 1,654,105 + Dsui_1578 0.69 -1.9 1,654,248 + Dsui_1578 0.74 +0.7 1,654,389 - Dsui_1578 0.80 -2.9 1,654,408 + Dsui_1578 0.80 -0.3 1,654,781 - -3.0 1,654,837 - -1.7 1,654,985 - -1.9 1,655,023 - -1.2 1,655,073 - +0.7 1,655,073 - -1.6 1,655,083 - +0.7 1,655,091 - +1.7 1,655,155 - +0.1 1,655,198 + -1.3 1,655,203 + +0.7 1,655,264 - +0.7 1,655,342 - Dsui_1579 0.16 -0.2 1,655,400 - Dsui_1579 0.21 -2.3 1,655,405 + Dsui_1579 0.21 -0.3 1,655,478 - Dsui_1579 0.27 -0.3 1,655,523 + Dsui_1579 0.31 +0.7 1,655,536 - Dsui_1579 0.32 -1.1 1,655,705 + +0.7 1,655,722 - Dsui_1579 0.47 -0.9 1,655,732 - Dsui_1579 0.48 -2.6 1,655,916 - Dsui_1579 0.63 +0.3
Or see this region's nucleotide sequence