Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1575 and Dsui_1576 are separated by 160 nucleotides Dsui_1576 and Dsui_1577 are separated by 12 nucleotides
Dsui_1575: Dsui_1575 - hypothetical protein, at 1,646,967 to 1,648,655
_1575
Dsui_1576: Dsui_1576 - dihydrolipoamide dehydrogenase, at 1,648,816 to 1,650,561
_1576
Dsui_1577: Dsui_1577 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 1,650,574 to 1,652,241
_1577
Position (kb)
1648
1649
1650
1651 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1647.823 kb on - strand, within Dsui_1575 at 1647.884 kb on + strand, within Dsui_1575 at 1647.932 kb on + strand, within Dsui_1575 at 1647.932 kb on + strand, within Dsui_1575 at 1647.961 kb on + strand, within Dsui_1575 at 1648.015 kb on - strand, within Dsui_1575 at 1648.030 kb on + strand, within Dsui_1575 at 1648.040 kb on + strand, within Dsui_1575 at 1648.055 kb on + strand, within Dsui_1575 at 1648.083 kb on - strand, within Dsui_1575 at 1648.096 kb on + strand, within Dsui_1575 at 1648.096 kb on + strand, within Dsui_1575 at 1648.178 kb on + strand, within Dsui_1575 at 1648.186 kb on + strand, within Dsui_1575 at 1648.218 kb on - strand, within Dsui_1575 at 1648.248 kb on + strand, within Dsui_1575 at 1648.257 kb on + strand, within Dsui_1575 at 1648.296 kb on + strand at 1648.321 kb on - strand, within Dsui_1575 at 1648.328 kb on + strand, within Dsui_1575 at 1648.328 kb on + strand, within Dsui_1575 at 1648.416 kb on + strand, within Dsui_1575 at 1648.528 kb on + strand at 1648.533 kb on - strand at 1648.613 kb on - strand at 1648.639 kb on - strand at 1648.639 kb on - strand at 1648.660 kb on - strand at 1648.660 kb on - strand at 1648.680 kb on - strand at 1648.721 kb on + strand at 1648.721 kb on + strand at 1648.804 kb on - strand at 1649.184 kb on - strand, within Dsui_1576 at 1649.184 kb on - strand, within Dsui_1576 at 1650.587 kb on - strand at 1651.025 kb on - strand, within Dsui_1577 at 1651.469 kb on - strand, within Dsui_1577
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 1,647,823 - Dsui_1575 0.51 -0.3 1,647,884 + Dsui_1575 0.54 +0.7 1,647,932 + Dsui_1575 0.57 -0.9 1,647,932 + Dsui_1575 0.57 -0.9 1,647,961 + Dsui_1575 0.59 -0.3 1,648,015 - Dsui_1575 0.62 -0.6 1,648,030 + Dsui_1575 0.63 +0.7 1,648,040 + Dsui_1575 0.64 +0.7 1,648,055 + Dsui_1575 0.64 -2.1 1,648,083 - Dsui_1575 0.66 -0.5 1,648,096 + Dsui_1575 0.67 +0.7 1,648,096 + Dsui_1575 0.67 -0.9 1,648,178 + Dsui_1575 0.72 -2.5 1,648,186 + Dsui_1575 0.72 -3.0 1,648,218 - Dsui_1575 0.74 -1.1 1,648,248 + Dsui_1575 0.76 -0.9 1,648,257 + Dsui_1575 0.76 -0.9 1,648,296 + +0.7 1,648,321 - Dsui_1575 0.80 -0.8 1,648,328 + Dsui_1575 0.81 +0.3 1,648,328 + Dsui_1575 0.81 -0.3 1,648,416 + Dsui_1575 0.86 -0.3 1,648,528 + -1.3 1,648,533 - -0.1 1,648,613 - -0.8 1,648,639 - -0.5 1,648,639 - -0.9 1,648,660 - -0.3 1,648,660 - -0.5 1,648,680 - +0.2 1,648,721 + +0.7 1,648,721 + -0.9 1,648,804 - -0.4 1,649,184 - Dsui_1576 0.21 -2.0 1,649,184 - Dsui_1576 0.21 -4.3 1,650,587 - -2.2 1,651,025 - Dsui_1577 0.27 -5.1 1,651,469 - Dsui_1577 0.54 -3.5
Or see this region's nucleotide sequence