Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1538 and Dsui_1539 are separated by 17 nucleotides Dsui_1539 and Dsui_1540 are separated by 177 nucleotides Dsui_1540 and Dsui_1541 overlap by 1 nucleotides Dsui_1541 and Dsui_1542 are separated by 117 nucleotides
Dsui_1538: Dsui_1538 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, at 1,598,551 to 1,599,735
_1538
Dsui_1539: Dsui_1539 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut, at 1,599,753 to 1,600,202
_1539
Dsui_1540: Dsui_1540 - NAD(FAD)-dependent dehydrogenase, at 1,600,380 to 1,601,675
_1540
Dsui_1541: Dsui_1541 - cytochrome c553, at 1,601,675 to 1,602,010
_1541
Dsui_1542: Dsui_1542 - small-conductance mechanosensitive channel, at 1,602,128 to 1,603,423
_1542
Position (kb)
1600
1601
1602 Strain fitness (log2 ratio)
-2
-1
0
1 at 1600.354 kb on + strand at 1600.425 kb on + strand at 1600.543 kb on - strand, within Dsui_1540 at 1600.835 kb on + strand, within Dsui_1540 at 1600.839 kb on + strand at 1600.884 kb on + strand, within Dsui_1540 at 1600.886 kb on - strand, within Dsui_1540 at 1600.898 kb on + strand, within Dsui_1540 at 1600.906 kb on - strand, within Dsui_1540 at 1600.906 kb on - strand, within Dsui_1540 at 1600.917 kb on - strand, within Dsui_1540 at 1600.942 kb on + strand, within Dsui_1540 at 1601.011 kb on + strand, within Dsui_1540 at 1601.072 kb on - strand, within Dsui_1540 at 1601.232 kb on + strand at 1601.420 kb on + strand at 1601.465 kb on + strand at 1601.465 kb on + strand at 1601.469 kb on - strand, within Dsui_1540 at 1601.644 kb on + strand at 1601.663 kb on + strand at 1601.670 kb on + strand at 1601.735 kb on + strand, within Dsui_1541 at 1601.736 kb on + strand at 1601.736 kb on + strand at 1601.744 kb on - strand, within Dsui_1541 at 1601.744 kb on - strand, within Dsui_1541 at 1601.817 kb on + strand, within Dsui_1541 at 1601.825 kb on - strand, within Dsui_1541 at 1601.825 kb on - strand, within Dsui_1541 at 1601.945 kb on + strand, within Dsui_1541 at 1601.953 kb on - strand, within Dsui_1541 at 1601.998 kb on - strand at 1602.013 kb on - strand at 1602.013 kb on - strand at 1602.042 kb on + strand at 1602.050 kb on - strand at 1602.050 kb on - strand at 1602.050 kb on - strand at 1602.050 kb on - strand at 1602.070 kb on - strand at 1602.076 kb on - strand at 1602.152 kb on - strand at 1602.273 kb on + strand, within Dsui_1542 at 1602.274 kb on - strand, within Dsui_1542 at 1602.304 kb on + strand at 1602.381 kb on + strand at 1602.485 kb on + strand, within Dsui_1542 at 1602.509 kb on - strand, within Dsui_1542 at 1602.556 kb on - strand, within Dsui_1542
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 1,600,354 + -1.3 1,600,425 + -0.3 1,600,543 - Dsui_1540 0.13 -0.4 1,600,835 + Dsui_1540 0.35 -0.3 1,600,839 + +0.7 1,600,884 + Dsui_1540 0.39 -0.3 1,600,886 - Dsui_1540 0.39 -0.8 1,600,898 + Dsui_1540 0.40 -0.9 1,600,906 - Dsui_1540 0.41 -0.9 1,600,906 - Dsui_1540 0.41 -0.6 1,600,917 - Dsui_1540 0.41 -0.9 1,600,942 + Dsui_1540 0.43 -0.3 1,601,011 + Dsui_1540 0.49 -0.3 1,601,072 - Dsui_1540 0.53 -0.6 1,601,232 + +0.7 1,601,420 + +0.7 1,601,465 + +0.7 1,601,465 + +0.7 1,601,469 - Dsui_1540 0.84 -0.4 1,601,644 + +0.7 1,601,663 + +0.7 1,601,670 + +0.7 1,601,735 + Dsui_1541 0.18 -2.1 1,601,736 + -0.3 1,601,736 + +0.7 1,601,744 - Dsui_1541 0.21 +0.1 1,601,744 - Dsui_1541 0.21 -0.5 1,601,817 + Dsui_1541 0.42 -1.3 1,601,825 - Dsui_1541 0.45 -0.4 1,601,825 - Dsui_1541 0.45 -0.5 1,601,945 + Dsui_1541 0.80 -0.3 1,601,953 - Dsui_1541 0.83 -0.5 1,601,998 - -0.5 1,602,013 - -0.9 1,602,013 - -0.6 1,602,042 + -0.3 1,602,050 - -0.4 1,602,050 - -0.3 1,602,050 - -0.6 1,602,050 - -0.2 1,602,070 - -0.7 1,602,076 - -1.0 1,602,152 - -1.1 1,602,273 + Dsui_1542 0.11 -1.9 1,602,274 - Dsui_1542 0.11 -0.6 1,602,304 + +0.7 1,602,381 + +0.7 1,602,485 + Dsui_1542 0.28 -0.9 1,602,509 - Dsui_1542 0.29 -0.5 1,602,556 - Dsui_1542 0.33 -1.7
Or see this region's nucleotide sequence