Strain Fitness in Dechlorosoma suillum PS around Dsui_1408

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1407 and Dsui_1408 are separated by 134 nucleotidesDsui_1408 and Dsui_1409 are separated by 24 nucleotides Dsui_1407: Dsui_1407 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,464,749 to 1,466,002 _1407 Dsui_1408: Dsui_1408 - NifZ domain-containing protein, at 1,466,137 to 1,466,406 _1408 Dsui_1409: Dsui_1409 - cation diffusion facilitator family transporter, at 1,466,431 to 1,467,318 _1409 Position (kb) 1466 1467Strain fitness (log2 ratio) -2 -1 0 1at 1466.127 kb on + strandat 1466.142 kb on - strandat 1466.365 kb on + strand, within Dsui_1408at 1466.384 kb on - strandat 1466.429 kb on + strandat 1466.436 kb on - strandat 1466.492 kb on - strandat 1466.504 kb on + strandat 1466.512 kb on - strandat 1466.531 kb on + strand, within Dsui_1409at 1466.586 kb on + strandat 1466.631 kb on + strand, within Dsui_1409at 1466.700 kb on + strandat 1466.714 kb on + strand, within Dsui_1409at 1466.811 kb on + strandat 1466.819 kb on - strand, within Dsui_1409at 1466.985 kb on - strand, within Dsui_1409at 1467.106 kb on - strand, within Dsui_1409at 1467.134 kb on - strand, within Dsui_1409at 1467.152 kb on + strand, within Dsui_1409at 1467.160 kb on - strand, within Dsui_1409at 1467.244 kb on + strandat 1467.322 kb on - strandat 1467.324 kb on + strandat 1467.324 kb on + strandat 1467.324 kb on + strandat 1467.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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1,466,127 + -0.4
1,466,142 - -1.4
1,466,365 + Dsui_1408 0.84 -1.0
1,466,384 - -0.4
1,466,429 + -2.0
1,466,436 - -0.4
1,466,492 - -0.6
1,466,504 + -0.4
1,466,512 - -0.4
1,466,531 + Dsui_1409 0.11 -1.8
1,466,586 + +0.6
1,466,631 + Dsui_1409 0.23 -0.4
1,466,700 + +0.6
1,466,714 + Dsui_1409 0.32 +0.6
1,466,811 + +0.6
1,466,819 - Dsui_1409 0.44 -0.4
1,466,985 - Dsui_1409 0.62 -1.4
1,467,106 - Dsui_1409 0.76 +0.6
1,467,134 - Dsui_1409 0.79 -1.0
1,467,152 + Dsui_1409 0.81 -1.4
1,467,160 - Dsui_1409 0.82 -0.3
1,467,244 + -1.0
1,467,322 - -1.4
1,467,324 + -0.4
1,467,324 + +0.6
1,467,324 + -2.6
1,467,332 - -1.4

Or see this region's nucleotide sequence