Strain Fitness in Dechlorosoma suillum PS around Dsui_1251

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1250 and Dsui_1251 overlap by 8 nucleotidesDsui_1251 and Dsui_1252 are separated by 12 nucleotidesDsui_1252 and Dsui_1253 are separated by 120 nucleotides Dsui_1250: Dsui_1250 - sulfate permease-like transporter, MFS superfamily, at 1,312,264 to 1,313,931 _1250 Dsui_1251: Dsui_1251 - acylphosphatase, at 1,313,924 to 1,314,211 _1251 Dsui_1252: Dsui_1252 - hypothetical protein, at 1,314,224 to 1,314,817 _1252 Dsui_1253: Dsui_1253 - peroxiredoxin, at 1,314,938 to 1,315,537 _1253 Position (kb) 1313 1314 1315Strain fitness (log2 ratio) -3 -2 -1 0 1at 1313.009 kb on + strand, within Dsui_1250at 1313.017 kb on - strand, within Dsui_1250at 1313.063 kb on - strand, within Dsui_1250at 1313.165 kb on + strand, within Dsui_1250at 1313.213 kb on + strand, within Dsui_1250at 1313.221 kb on - strand, within Dsui_1250at 1313.265 kb on - strand, within Dsui_1250at 1313.266 kb on - strand, within Dsui_1250at 1313.272 kb on - strand, within Dsui_1250at 1313.274 kb on + strand, within Dsui_1250at 1313.485 kb on + strand, within Dsui_1250at 1313.487 kb on - strand, within Dsui_1250at 1313.493 kb on - strand, within Dsui_1250at 1313.516 kb on + strandat 1313.516 kb on + strand, within Dsui_1250at 1313.524 kb on - strand, within Dsui_1250at 1313.539 kb on + strand, within Dsui_1250at 1313.539 kb on + strand, within Dsui_1250at 1313.547 kb on - strandat 1313.625 kb on + strand, within Dsui_1250at 1313.672 kb on + strand, within Dsui_1250at 1313.672 kb on + strand, within Dsui_1250at 1313.720 kb on + strand, within Dsui_1250at 1313.747 kb on - strand, within Dsui_1250at 1313.958 kb on + strand, within Dsui_1251at 1314.002 kb on + strand, within Dsui_1251at 1314.010 kb on - strand, within Dsui_1251at 1314.067 kb on - strandat 1314.186 kb on + strandat 1314.196 kb on + strandat 1314.206 kb on - strandat 1314.260 kb on + strandat 1314.339 kb on - strand, within Dsui_1252at 1314.371 kb on + strand, within Dsui_1252at 1314.371 kb on + strand, within Dsui_1252at 1314.376 kb on - strandat 1314.384 kb on - strand, within Dsui_1252at 1314.443 kb on - strand, within Dsui_1252at 1314.458 kb on - strandat 1314.551 kb on + strand, within Dsui_1252at 1314.559 kb on - strand, within Dsui_1252at 1314.598 kb on + strand, within Dsui_1252at 1314.685 kb on - strandat 1314.803 kb on - strandat 1314.837 kb on - strandat 1314.954 kb on + strandat 1314.954 kb on + strandat 1314.964 kb on - strandat 1315.038 kb on - strand, within Dsui_1253at 1315.038 kb on - strand, within Dsui_1253at 1315.038 kb on - strand, within Dsui_1253at 1315.038 kb on - strandat 1315.089 kb on + strand, within Dsui_1253at 1315.104 kb on + strand, within Dsui_1253at 1315.148 kb on + strand, within Dsui_1253at 1315.148 kb on + strand, within Dsui_1253at 1315.148 kb on + strand, within Dsui_1253at 1315.156 kb on - strandat 1315.156 kb on - strand, within Dsui_1253at 1315.156 kb on - strandat 1315.158 kb on + strand, within Dsui_1253at 1315.166 kb on - strand, within Dsui_1253

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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1,313,009 + Dsui_1250 0.45 +0.5
1,313,017 - Dsui_1250 0.45 -1.1
1,313,063 - Dsui_1250 0.48 +0.5
1,313,165 + Dsui_1250 0.54 -1.1
1,313,213 + Dsui_1250 0.57 -1.0
1,313,221 - Dsui_1250 0.57 -1.1
1,313,265 - Dsui_1250 0.60 -1.5
1,313,266 - Dsui_1250 0.60 -3.1
1,313,272 - Dsui_1250 0.60 -1.5
1,313,274 + Dsui_1250 0.61 -0.5
1,313,485 + Dsui_1250 0.73 -0.7
1,313,487 - Dsui_1250 0.73 -0.5
1,313,493 - Dsui_1250 0.74 +0.5
1,313,516 + -2.3
1,313,516 + Dsui_1250 0.75 -0.3
1,313,524 - Dsui_1250 0.76 -3.2
1,313,539 + Dsui_1250 0.76 -0.6
1,313,539 + Dsui_1250 0.76 -1.2
1,313,547 - +0.5
1,313,625 + Dsui_1250 0.82 -1.3
1,313,672 + Dsui_1250 0.84 +0.8
1,313,672 + Dsui_1250 0.84 +1.1
1,313,720 + Dsui_1250 0.87 +0.3
1,313,747 - Dsui_1250 0.89 -1.1
1,313,958 + Dsui_1251 0.12 +0.5
1,314,002 + Dsui_1251 0.27 -0.5
1,314,010 - Dsui_1251 0.30 -0.5
1,314,067 - +0.5
1,314,186 + +0.5
1,314,196 + -1.8
1,314,206 - +0.5
1,314,260 + -0.2
1,314,339 - Dsui_1252 0.19 -2.1
1,314,371 + Dsui_1252 0.25 +0.8
1,314,371 + Dsui_1252 0.25 -0.5
1,314,376 - +0.5
1,314,384 - Dsui_1252 0.27 +0.5
1,314,443 - Dsui_1252 0.37 +0.5
1,314,458 - +0.5
1,314,551 + Dsui_1252 0.55 +0.5
1,314,559 - Dsui_1252 0.56 -1.8
1,314,598 + Dsui_1252 0.63 -0.4
1,314,685 - +0.5
1,314,803 - +0.5
1,314,837 - -1.5
1,314,954 + -0.6
1,314,954 + -0.5
1,314,964 - +0.5
1,315,038 - Dsui_1253 0.17 -1.1
1,315,038 - Dsui_1253 0.17 -0.5
1,315,038 - Dsui_1253 0.17 -0.5
1,315,038 - +0.5
1,315,089 + Dsui_1253 0.25 -0.3
1,315,104 + Dsui_1253 0.28 -0.4
1,315,148 + Dsui_1253 0.35 +0.1
1,315,148 + Dsui_1253 0.35 -0.2
1,315,148 + Dsui_1253 0.35 -0.2
1,315,156 - +0.5
1,315,156 - Dsui_1253 0.36 -1.1
1,315,156 - +0.5
1,315,158 + Dsui_1253 0.37 -0.3
1,315,166 - Dsui_1253 0.38 -2.5

Or see this region's nucleotide sequence