Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1017 and Dsui_1018 are separated by 588 nucleotides Dsui_1018 and Dsui_1019 overlap by 30 nucleotides
Dsui_1017: Dsui_1017 - hypothetical protein, at 1,050,402 to 1,050,809
_1017
Dsui_1018: Dsui_1018 - hypothetical protein, at 1,051,398 to 1,051,616
_1018
Dsui_1019: Dsui_1019 - transposase, at 1,051,587 to 1,052,387
_1019
Position (kb)
1051
1052 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1050.420 kb on + strand at 1050.428 kb on - strand at 1050.443 kb on + strand, within Dsui_1017 at 1050.475 kb on - strand, within Dsui_1017 at 1050.522 kb on + strand, within Dsui_1017 at 1050.537 kb on + strand, within Dsui_1017 at 1050.568 kb on + strand, within Dsui_1017 at 1050.572 kb on + strand, within Dsui_1017 at 1050.580 kb on - strand, within Dsui_1017 at 1050.613 kb on - strand, within Dsui_1017 at 1050.669 kb on - strand, within Dsui_1017 at 1050.687 kb on + strand, within Dsui_1017 at 1050.694 kb on - strand, within Dsui_1017 at 1050.695 kb on - strand, within Dsui_1017 at 1050.695 kb on - strand, within Dsui_1017 at 1050.697 kb on + strand, within Dsui_1017 at 1050.698 kb on + strand, within Dsui_1017 at 1050.743 kb on - strand, within Dsui_1017 at 1050.821 kb on - strand at 1050.835 kb on - strand at 1050.847 kb on - strand at 1050.863 kb on + strand at 1050.938 kb on + strand at 1050.938 kb on + strand at 1050.943 kb on + strand at 1050.986 kb on + strand at 1051.031 kb on - strand at 1051.031 kb on - strand at 1051.044 kb on + strand at 1051.059 kb on - strand at 1051.139 kb on + strand at 1051.142 kb on + strand at 1051.142 kb on + strand at 1051.142 kb on + strand at 1051.150 kb on - strand at 1051.253 kb on + strand at 1051.253 kb on + strand at 1051.254 kb on - strand at 1051.285 kb on + strand at 1051.293 kb on - strand at 1051.297 kb on - strand at 1051.385 kb on + strand at 1051.454 kb on + strand, within Dsui_1018 at 1051.475 kb on + strand, within Dsui_1018 at 1051.527 kb on - strand, within Dsui_1018 at 1051.535 kb on + strand, within Dsui_1018 at 1051.543 kb on - strand, within Dsui_1018 at 1051.554 kb on - strand, within Dsui_1018 at 1051.554 kb on - strand, within Dsui_1018 at 1051.572 kb on - strand, within Dsui_1018 at 1051.573 kb on - strand, within Dsui_1018 at 1051.573 kb on - strand, within Dsui_1018 at 1051.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 1,050,420 + +0.8 1,050,428 - +0.8 1,050,443 + Dsui_1017 0.10 +0.1 1,050,475 - Dsui_1017 0.18 -1.6 1,050,522 + Dsui_1017 0.29 +0.8 1,050,537 + Dsui_1017 0.33 +2.8 1,050,568 + Dsui_1017 0.41 +1.8 1,050,572 + Dsui_1017 0.42 +0.8 1,050,580 - Dsui_1017 0.44 +0.8 1,050,613 - Dsui_1017 0.52 +0.8 1,050,669 - Dsui_1017 0.65 +0.8 1,050,687 + Dsui_1017 0.70 +0.8 1,050,694 - Dsui_1017 0.72 -0.2 1,050,695 - Dsui_1017 0.72 +0.8 1,050,695 - Dsui_1017 0.72 -0.8 1,050,697 + Dsui_1017 0.72 -2.1 1,050,698 + Dsui_1017 0.73 -1.2 1,050,743 - Dsui_1017 0.84 -0.2 1,050,821 - -2.6 1,050,835 - -0.2 1,050,847 - +0.8 1,050,863 + -0.8 1,050,938 + -0.2 1,050,938 + -0.8 1,050,943 + -1.6 1,050,986 + +2.0 1,051,031 - +0.8 1,051,031 - -0.2 1,051,044 + -2.6 1,051,059 - -1.2 1,051,139 + -0.2 1,051,142 + -0.3 1,051,142 + -0.7 1,051,142 + -2.4 1,051,150 - -0.8 1,051,253 + +0.2 1,051,253 + -0.3 1,051,254 - +0.8 1,051,285 + +0.8 1,051,293 - -0.8 1,051,297 - -0.8 1,051,385 + +0.8 1,051,454 + Dsui_1018 0.26 -0.8 1,051,475 + Dsui_1018 0.35 -0.7 1,051,527 - Dsui_1018 0.59 -1.2 1,051,535 + Dsui_1018 0.63 +0.8 1,051,543 - Dsui_1018 0.66 +0.8 1,051,554 - Dsui_1018 0.71 -2.1 1,051,554 - Dsui_1018 0.71 -0.2 1,051,572 - Dsui_1018 0.79 -2.1 1,051,573 - Dsui_1018 0.80 -0.8 1,051,573 - Dsui_1018 0.80 +0.8 1,051,594 - -1.6
Or see this region's nucleotide sequence