Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1001 and Dsui_1002 overlap by 4 nucleotides Dsui_1002 and Dsui_1003 are separated by 15 nucleotides Dsui_1003 and Dsui_1004 are separated by 113 nucleotides Dsui_1004 and Dsui_1005 are separated by 88 nucleotides Dsui_1005 and Dsui_1006 are separated by 40 nucleotides
Dsui_1001: Dsui_1001 - hypothetical protein, at 1,028,965 to 1,030,335
_1001
Dsui_1002: Dsui_1002 - prolyl oligopeptidase family protein, at 1,030,332 to 1,031,246
_1002
Dsui_1003: Dsui_1003 - phosphoribosylglycinamide formyltransferase 2, at 1,031,262 to 1,032,494
_1003
Dsui_1004: Dsui_1004 - conserved protein of DIM6/NTAB family, at 1,032,608 to 1,033,159
_1004
Dsui_1005: Dsui_1005 - tRNA-Gly, at 1,033,248 to 1,033,321
_1005
Dsui_1006: Dsui_1006 - transcriptional regulator, at 1,033,362 to 1,034,282
_1006
Position (kb)
1031
1032
1033 Strain fitness (log2 ratio)
-2
-1
0
1 at 1030.278 kb on + strand at 1030.298 kb on + strand at 1030.358 kb on - strand at 1030.552 kb on + strand, within Dsui_1002 at 1030.631 kb on + strand at 1030.649 kb on - strand, within Dsui_1002 at 1030.958 kb on - strand, within Dsui_1002 at 1031.172 kb on + strand at 1031.175 kb on - strand at 1031.180 kb on - strand at 1031.336 kb on + strand at 1031.360 kb on + strand at 1031.388 kb on + strand at 1031.422 kb on - strand, within Dsui_1003 at 1031.438 kb on - strand, within Dsui_1003 at 1031.438 kb on - strand, within Dsui_1003 at 1031.466 kb on - strand, within Dsui_1003 at 1031.516 kb on + strand, within Dsui_1003 at 1031.543 kb on - strand, within Dsui_1003 at 1031.596 kb on - strand, within Dsui_1003 at 1031.647 kb on + strand at 1031.725 kb on - strand, within Dsui_1003 at 1031.748 kb on + strand, within Dsui_1003 at 1031.783 kb on - strand, within Dsui_1003 at 1031.828 kb on + strand at 1031.828 kb on + strand, within Dsui_1003 at 1031.988 kb on - strand, within Dsui_1003 at 1032.031 kb on + strand, within Dsui_1003 at 1032.049 kb on + strand, within Dsui_1003 at 1032.229 kb on - strand, within Dsui_1003 at 1032.384 kb on + strand at 1032.394 kb on - strand at 1032.630 kb on + strand at 1032.710 kb on + strand, within Dsui_1004 at 1032.849 kb on + strand, within Dsui_1004 at 1032.884 kb on - strand at 1032.928 kb on - strand at 1033.006 kb on - strand at 1033.174 kb on + strand at 1033.257 kb on + strand, within Dsui_1005 at 1033.269 kb on + strand, within Dsui_1005 at 1033.277 kb on - strand at 1033.284 kb on + strand, within Dsui_1005 at 1033.349 kb on - strand at 1033.403 kb on - strand at 1033.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 1,030,278 + -0.2 1,030,298 + -0.8 1,030,358 - -0.2 1,030,552 + Dsui_1002 0.24 +0.8 1,030,631 + +0.8 1,030,649 - Dsui_1002 0.35 -2.4 1,030,958 - Dsui_1002 0.68 -2.2 1,031,172 + -0.2 1,031,175 - +0.1 1,031,180 - -0.5 1,031,336 + +0.8 1,031,360 + -1.8 1,031,388 + +0.8 1,031,422 - Dsui_1003 0.13 -1.2 1,031,438 - Dsui_1003 0.14 -0.2 1,031,438 - Dsui_1003 0.14 -0.1 1,031,466 - Dsui_1003 0.17 -0.9 1,031,516 + Dsui_1003 0.21 +0.8 1,031,543 - Dsui_1003 0.23 -0.8 1,031,596 - Dsui_1003 0.27 +0.2 1,031,647 + +0.8 1,031,725 - Dsui_1003 0.38 -0.6 1,031,748 + Dsui_1003 0.39 -0.2 1,031,783 - Dsui_1003 0.42 +0.5 1,031,828 + +0.8 1,031,828 + Dsui_1003 0.46 +0.8 1,031,988 - Dsui_1003 0.59 -0.5 1,032,031 + Dsui_1003 0.62 +0.8 1,032,049 + Dsui_1003 0.64 +0.8 1,032,229 - Dsui_1003 0.78 -0.2 1,032,384 + +0.8 1,032,394 - -0.5 1,032,630 + -1.6 1,032,710 + Dsui_1004 0.18 +0.6 1,032,849 + Dsui_1004 0.44 -1.1 1,032,884 - +0.8 1,032,928 - +0.8 1,033,006 - +0.8 1,033,174 + -0.3 1,033,257 + Dsui_1005 0.12 +0.5 1,033,269 + Dsui_1005 0.28 -0.3 1,033,277 - +0.8 1,033,284 + Dsui_1005 0.49 -0.8 1,033,349 - +0.8 1,033,403 - -0.6 1,033,413 - +0.0
Or see this region's nucleotide sequence