Strain Fitness in Dechlorosoma suillum PS around Dsui_0971

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0970 and Dsui_0971 are separated by 73 nucleotidesDsui_0971 and Dsui_0972 are separated by 18 nucleotides Dsui_0970: Dsui_0970 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 995,477 to 996,766 _0970 Dsui_0971: Dsui_0971 - poly(R)-hydroxyalkanoic acid synthase, class I, at 996,840 to 998,669 _0971 Dsui_0972: Dsui_0972 - Zn-dependent hydrolase, glyoxylase, at 998,688 to 999,722 _0972 Position (kb) 996 997 998 999Strain fitness (log2 ratio) -3 -2 -1 0 1at 996.113 kb on + strand, within Dsui_0970at 996.135 kb on + strand, within Dsui_0970at 996.144 kb on - strand, within Dsui_0970at 996.230 kb on - strandat 996.247 kb on - strand, within Dsui_0970at 996.299 kb on - strand, within Dsui_0970at 996.307 kb on - strand, within Dsui_0970at 996.312 kb on - strand, within Dsui_0970at 996.321 kb on + strand, within Dsui_0970at 996.422 kb on + strand, within Dsui_0970at 996.576 kb on + strand, within Dsui_0970at 996.595 kb on - strand, within Dsui_0970at 996.727 kb on + strandat 997.319 kb on + strand, within Dsui_0971at 997.319 kb on + strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.332 kb on - strand, within Dsui_0971at 997.344 kb on - strand, within Dsui_0971at 997.418 kb on + strand, within Dsui_0971at 997.452 kb on - strand, within Dsui_0971at 997.509 kb on - strand, within Dsui_0971at 997.570 kb on - strand, within Dsui_0971at 997.630 kb on + strand, within Dsui_0971at 997.643 kb on - strand, within Dsui_0971at 997.660 kb on - strand, within Dsui_0971at 997.821 kb on - strand, within Dsui_0971at 997.862 kb on + strand, within Dsui_0971at 997.862 kb on + strand, within Dsui_0971at 997.902 kb on + strand, within Dsui_0971at 997.944 kb on - strand, within Dsui_0971at 997.949 kb on - strand, within Dsui_0971at 998.020 kb on - strand, within Dsui_0971at 998.102 kb on + strand, within Dsui_0971at 998.110 kb on - strand, within Dsui_0971at 998.123 kb on - strand, within Dsui_0971at 998.172 kb on - strand, within Dsui_0971at 998.252 kb on - strand, within Dsui_0971at 998.278 kb on + strand, within Dsui_0971at 998.288 kb on + strand, within Dsui_0971at 998.325 kb on - strand, within Dsui_0971at 998.595 kb on - strandat 998.608 kb on + strandat 998.723 kb on - strandat 998.746 kb on - strandat 998.770 kb on - strandat 999.104 kb on - strand, within Dsui_0972at 999.141 kb on - strand, within Dsui_0972at 999.141 kb on - strand, within Dsui_0972at 999.172 kb on + strand, within Dsui_0972at 999.208 kb on - strand, within Dsui_0972at 999.281 kb on + strand, within Dsui_0972at 999.305 kb on + strand, within Dsui_0972at 999.333 kb on - strand, within Dsui_0972at 999.411 kb on - strand, within Dsui_0972at 999.431 kb on + strand, within Dsui_0972at 999.508 kb on - strand, within Dsui_0972at 999.510 kb on + strand, within Dsui_0972at 999.632 kb on - strandat 999.635 kb on + strandat 999.643 kb on - strandat 999.662 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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996,113 + Dsui_0970 0.49 -3.7
996,135 + Dsui_0970 0.51 +1.3
996,144 - Dsui_0970 0.52 +0.7
996,230 - +0.7
996,247 - Dsui_0970 0.60 -1.3
996,299 - Dsui_0970 0.64 -0.9
996,307 - Dsui_0970 0.64 +0.7
996,312 - Dsui_0970 0.65 -0.3
996,321 + Dsui_0970 0.65 -0.9
996,422 + Dsui_0970 0.73 +0.0
996,576 + Dsui_0970 0.85 -0.8
996,595 - Dsui_0970 0.87 -0.3
996,727 + -0.9
997,319 + Dsui_0971 0.26 +0.7
997,319 + Dsui_0971 0.26 +0.7
997,327 - Dsui_0971 0.27 +1.4
997,327 - Dsui_0971 0.27 -0.7
997,327 - Dsui_0971 0.27 -0.5
997,327 - Dsui_0971 0.27 +1.1
997,327 - Dsui_0971 0.27 -0.3
997,327 - Dsui_0971 0.27 +0.1
997,327 - Dsui_0971 0.27 +0.6
997,327 - Dsui_0971 0.27 -0.8
997,332 - Dsui_0971 0.27 -0.8
997,344 - Dsui_0971 0.28 +0.1
997,418 + Dsui_0971 0.32 -0.3
997,452 - Dsui_0971 0.33 +0.6
997,509 - Dsui_0971 0.37 +0.3
997,570 - Dsui_0971 0.40 -0.2
997,630 + Dsui_0971 0.43 -0.3
997,643 - Dsui_0971 0.44 -0.7
997,660 - Dsui_0971 0.45 -0.6
997,821 - Dsui_0971 0.54 -0.3
997,862 + Dsui_0971 0.56 +0.7
997,862 + Dsui_0971 0.56 +0.7
997,902 + Dsui_0971 0.58 -2.3
997,944 - Dsui_0971 0.60 -0.5
997,949 - Dsui_0971 0.61 -0.6
998,020 - Dsui_0971 0.64 -0.8
998,102 + Dsui_0971 0.69 -1.3
998,110 - Dsui_0971 0.69 -0.6
998,123 - Dsui_0971 0.70 -0.4
998,172 - Dsui_0971 0.73 -0.1
998,252 - Dsui_0971 0.77 -1.3
998,278 + Dsui_0971 0.79 +0.7
998,288 + Dsui_0971 0.79 +0.7
998,325 - Dsui_0971 0.81 -0.8
998,595 - +0.9
998,608 + +0.7
998,723 - -0.6
998,746 - -0.6
998,770 - -0.2
999,104 - Dsui_0972 0.40 +0.2
999,141 - Dsui_0972 0.44 -0.3
999,141 - Dsui_0972 0.44 +0.7
999,172 + Dsui_0972 0.47 -0.3
999,208 - Dsui_0972 0.50 -0.9
999,281 + Dsui_0972 0.57 -1.3
999,305 + Dsui_0972 0.60 -1.3
999,333 - Dsui_0972 0.62 +0.3
999,411 - Dsui_0972 0.70 +0.3
999,431 + Dsui_0972 0.72 +0.7
999,508 - Dsui_0972 0.79 +0.2
999,510 + Dsui_0972 0.79 +0.7
999,632 - +0.7
999,635 + -0.9
999,643 - -1.1
999,662 + -0.3

Or see this region's nucleotide sequence