Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0960 and Dsui_0961 are separated by 96 nucleotides Dsui_0961 and Dsui_0962 are separated by 140 nucleotides Dsui_0962 and Dsui_0963 are separated by 17 nucleotides Dsui_0963 and Dsui_0964 are separated by 1 nucleotides
Dsui_0960: Dsui_0960 - putative permease, at 985,700 to 986,755
_0960
Dsui_0961: Dsui_0961 - RNA polymerase sigma factor, SigZ family, at 986,852 to 987,415
_0961
Dsui_0962: Dsui_0962 - collagenase-like protease, at 987,556 to 988,569
_0962
Dsui_0963: Dsui_0963 - collagenase-like protease, at 988,587 to 989,498
_0963
Dsui_0964: Dsui_0964 - putative lipid carrier protein, at 989,500 to 989,997
_0964
Position (kb)
987
988
989 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 986.593 kb on + strand, within Dsui_0960 at 986.611 kb on + strand, within Dsui_0960 at 986.852 kb on - strand at 986.927 kb on + strand at 986.975 kb on + strand, within Dsui_0961 at 986.996 kb on - strand, within Dsui_0961 at 987.008 kb on - strand, within Dsui_0961 at 987.216 kb on - strand, within Dsui_0961 at 987.228 kb on + strand at 987.316 kb on + strand, within Dsui_0961 at 987.324 kb on - strand, within Dsui_0961 at 987.436 kb on + strand at 987.480 kb on - strand at 987.524 kb on - strand at 987.524 kb on - strand at 987.599 kb on + strand at 987.721 kb on + strand, within Dsui_0962 at 987.773 kb on + strand, within Dsui_0962 at 987.845 kb on + strand, within Dsui_0962 at 987.845 kb on + strand, within Dsui_0962 at 987.919 kb on + strand, within Dsui_0962 at 987.924 kb on + strand, within Dsui_0962 at 987.946 kb on - strand, within Dsui_0962 at 987.988 kb on + strand, within Dsui_0962 at 988.074 kb on + strand, within Dsui_0962 at 988.256 kb on + strand, within Dsui_0962 at 988.256 kb on + strand, within Dsui_0962 at 988.256 kb on + strand, within Dsui_0962 at 988.256 kb on + strand, within Dsui_0962 at 988.264 kb on - strand, within Dsui_0962 at 988.284 kb on + strand, within Dsui_0962 at 988.350 kb on - strand, within Dsui_0962 at 988.411 kb on - strand, within Dsui_0962 at 988.462 kb on - strand, within Dsui_0962 at 988.619 kb on - strand at 988.630 kb on - strand at 988.888 kb on - strand, within Dsui_0963 at 988.896 kb on - strand, within Dsui_0963 at 988.967 kb on - strand, within Dsui_0963 at 989.027 kb on + strand, within Dsui_0963 at 989.081 kb on - strand, within Dsui_0963 at 989.167 kb on - strand, within Dsui_0963 at 989.273 kb on + strand, within Dsui_0963 at 989.320 kb on + strand, within Dsui_0963 at 989.428 kb on - strand at 989.473 kb on + strand at 989.497 kb on + strand at 989.530 kb on - strand at 989.530 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 986,593 + Dsui_0960 0.85 -0.3 986,611 + Dsui_0960 0.86 +0.7 986,852 - +0.7 986,927 + +0.7 986,975 + Dsui_0961 0.22 +0.7 986,996 - Dsui_0961 0.26 +0.7 987,008 - Dsui_0961 0.28 -2.1 987,216 - Dsui_0961 0.65 -0.3 987,228 + +0.7 987,316 + Dsui_0961 0.82 -0.3 987,324 - Dsui_0961 0.84 -1.9 987,436 + -1.7 987,480 - +0.7 987,524 - +0.7 987,524 - -0.3 987,599 + -0.6 987,721 + Dsui_0962 0.16 -0.6 987,773 + Dsui_0962 0.21 -0.5 987,845 + Dsui_0962 0.29 +0.1 987,845 + Dsui_0962 0.29 -0.6 987,919 + Dsui_0962 0.36 +0.1 987,924 + Dsui_0962 0.36 -0.0 987,946 - Dsui_0962 0.38 -2.3 987,988 + Dsui_0962 0.43 -0.2 988,074 + Dsui_0962 0.51 -0.2 988,256 + Dsui_0962 0.69 -1.1 988,256 + Dsui_0962 0.69 +0.2 988,256 + Dsui_0962 0.69 -0.1 988,256 + Dsui_0962 0.69 -0.6 988,264 - Dsui_0962 0.70 +0.7 988,284 + Dsui_0962 0.72 -0.3 988,350 - Dsui_0962 0.78 -1.7 988,411 - Dsui_0962 0.84 -0.3 988,462 - Dsui_0962 0.89 -0.3 988,619 - +0.7 988,630 - -0.3 988,888 - Dsui_0963 0.33 -0.3 988,896 - Dsui_0963 0.34 -0.9 988,967 - Dsui_0963 0.42 -0.9 989,027 + Dsui_0963 0.48 -0.7 989,081 - Dsui_0963 0.54 -0.3 989,167 - Dsui_0963 0.64 -2.5 989,273 + Dsui_0963 0.75 +0.2 989,320 + Dsui_0963 0.80 +0.1 989,428 - +0.6 989,473 + -0.3 989,497 + -0.6 989,530 - -3.0 989,530 - +0.2
Or see this region's nucleotide sequence