Strain Fitness in Dechlorosoma suillum PS around Dsui_0961

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0960 and Dsui_0961 are separated by 96 nucleotidesDsui_0961 and Dsui_0962 are separated by 140 nucleotides Dsui_0960: Dsui_0960 - putative permease, at 985,700 to 986,755 _0960 Dsui_0961: Dsui_0961 - RNA polymerase sigma factor, SigZ family, at 986,852 to 987,415 _0961 Dsui_0962: Dsui_0962 - collagenase-like protease, at 987,556 to 988,569 _0962 Position (kb) 986 987 988Strain fitness (log2 ratio) -2 -1 0 1at 985.856 kb on + strand, within Dsui_0960at 985.869 kb on - strand, within Dsui_0960at 985.932 kb on + strand, within Dsui_0960at 986.099 kb on + strandat 986.165 kb on + strand, within Dsui_0960at 986.190 kb on + strand, within Dsui_0960at 986.237 kb on + strand, within Dsui_0960at 986.271 kb on - strand, within Dsui_0960at 986.294 kb on - strand, within Dsui_0960at 986.438 kb on + strand, within Dsui_0960at 986.593 kb on + strand, within Dsui_0960at 986.611 kb on + strand, within Dsui_0960at 986.852 kb on - strandat 986.927 kb on + strandat 986.975 kb on + strand, within Dsui_0961at 986.996 kb on - strand, within Dsui_0961at 987.008 kb on - strand, within Dsui_0961at 987.216 kb on - strand, within Dsui_0961at 987.228 kb on + strandat 987.316 kb on + strand, within Dsui_0961at 987.324 kb on - strand, within Dsui_0961at 987.436 kb on + strandat 987.480 kb on - strandat 987.524 kb on - strandat 987.524 kb on - strandat 987.599 kb on + strandat 987.721 kb on + strand, within Dsui_0962at 987.773 kb on + strand, within Dsui_0962at 987.845 kb on + strand, within Dsui_0962at 987.845 kb on + strand, within Dsui_0962at 987.919 kb on + strand, within Dsui_0962at 987.924 kb on + strand, within Dsui_0962at 987.946 kb on - strand, within Dsui_0962at 987.988 kb on + strand, within Dsui_0962at 988.074 kb on + strand, within Dsui_0962at 988.256 kb on + strand, within Dsui_0962at 988.256 kb on + strand, within Dsui_0962at 988.256 kb on + strand, within Dsui_0962at 988.256 kb on + strand, within Dsui_0962at 988.264 kb on - strand, within Dsui_0962at 988.284 kb on + strand, within Dsui_0962at 988.350 kb on - strand, within Dsui_0962at 988.411 kb on - strand, within Dsui_0962

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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985,856 + Dsui_0960 0.15 -0.3
985,869 - Dsui_0960 0.16 +0.7
985,932 + Dsui_0960 0.22 -0.9
986,099 + +0.7
986,165 + Dsui_0960 0.44 +0.7
986,190 + Dsui_0960 0.46 -0.9
986,237 + Dsui_0960 0.51 +0.7
986,271 - Dsui_0960 0.54 -0.9
986,294 - Dsui_0960 0.56 -2.3
986,438 + Dsui_0960 0.70 -0.9
986,593 + Dsui_0960 0.85 -0.3
986,611 + Dsui_0960 0.86 +0.7
986,852 - +0.7
986,927 + +0.7
986,975 + Dsui_0961 0.22 +0.7
986,996 - Dsui_0961 0.26 +0.7
987,008 - Dsui_0961 0.28 -2.1
987,216 - Dsui_0961 0.65 -0.3
987,228 + +0.7
987,316 + Dsui_0961 0.82 -0.3
987,324 - Dsui_0961 0.84 -1.9
987,436 + -1.7
987,480 - +0.7
987,524 - +0.7
987,524 - -0.3
987,599 + -0.6
987,721 + Dsui_0962 0.16 -0.6
987,773 + Dsui_0962 0.21 -0.5
987,845 + Dsui_0962 0.29 +0.1
987,845 + Dsui_0962 0.29 -0.6
987,919 + Dsui_0962 0.36 +0.1
987,924 + Dsui_0962 0.36 -0.0
987,946 - Dsui_0962 0.38 -2.3
987,988 + Dsui_0962 0.43 -0.2
988,074 + Dsui_0962 0.51 -0.2
988,256 + Dsui_0962 0.69 -1.1
988,256 + Dsui_0962 0.69 +0.2
988,256 + Dsui_0962 0.69 -0.1
988,256 + Dsui_0962 0.69 -0.6
988,264 - Dsui_0962 0.70 +0.7
988,284 + Dsui_0962 0.72 -0.3
988,350 - Dsui_0962 0.78 -1.7
988,411 - Dsui_0962 0.84 -0.3

Or see this region's nucleotide sequence