Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0939 and Dsui_0940 are separated by 93 nucleotides Dsui_0940 and Dsui_0941 are separated by 152 nucleotides Dsui_0941 and Dsui_0942 are separated by 153 nucleotides
Dsui_0939: Dsui_0939 - diguanylate cyclase (GGDEF) domain-containing protein, at 966,373 to 968,235
_0939
Dsui_0940: Dsui_0940 - Nif-specific regulatory protein, at 968,329 to 970,062
_0940
Dsui_0941: Dsui_0941 - nitrogenase-associated protein, at 970,215 to 970,643
_0941
Dsui_0942: Dsui_0942 - hypothetical protein, at 970,797 to 971,366
_0942
Position (kb) 968
969
970
971 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 967.415 kb on - strand at 967.503 kb on - strand, within Dsui_0939 at 967.522 kb on - strand, within Dsui_0939 at 967.892 kb on - strand, within Dsui_0939 at 968.254 kb on + strand at 968.277 kb on - strand at 968.368 kb on - strand at 968.383 kb on - strand at 968.489 kb on - strand at 968.612 kb on - strand, within Dsui_0940 at 968.780 kb on + strand, within Dsui_0940 at 969.184 kb on - strand, within Dsui_0940 at 969.184 kb on - strand, within Dsui_0940 at 969.235 kb on - strand, within Dsui_0940 at 969.272 kb on - strand, within Dsui_0940 at 969.281 kb on + strand, within Dsui_0940 at 969.296 kb on + strand at 969.297 kb on - strand, within Dsui_0940 at 969.314 kb on - strand, within Dsui_0940 at 969.396 kb on - strand, within Dsui_0940 at 969.416 kb on + strand, within Dsui_0940 at 969.454 kb on - strand at 969.592 kb on + strand, within Dsui_0940 at 969.602 kb on - strand, within Dsui_0940 at 969.683 kb on + strand, within Dsui_0940 at 969.691 kb on - strand, within Dsui_0940 at 969.691 kb on - strand, within Dsui_0940 at 969.978 kb on - strand at 969.983 kb on - strand at 969.998 kb on + strand at 970.121 kb on - strand at 970.337 kb on + strand at 970.414 kb on + strand, within Dsui_0941 at 970.434 kb on - strand at 970.469 kb on + strand, within Dsui_0941 at 970.581 kb on - strand, within Dsui_0941 at 970.853 kb on - strand at 970.954 kb on + strand, within Dsui_0942 at 970.962 kb on - strand, within Dsui_0942 at 970.977 kb on + strand, within Dsui_0942 at 971.009 kb on + strand, within Dsui_0942 at 971.038 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 967,415 - +0.7 967,503 - Dsui_0939 0.61 -0.3 967,522 - Dsui_0939 0.62 -1.3 967,892 - Dsui_0939 0.82 -1.3 968,254 + +0.6 968,277 - +0.6 968,368 - +0.6 968,383 - +0.6 968,489 - +0.6 968,612 - Dsui_0940 0.16 -2.7 968,780 + Dsui_0940 0.26 -1.9 969,184 - Dsui_0940 0.49 -1.4 969,184 - Dsui_0940 0.49 -0.9 969,235 - Dsui_0940 0.52 -0.4 969,272 - Dsui_0940 0.54 +0.6 969,281 + Dsui_0940 0.55 -0.4 969,296 + +0.6 969,297 - Dsui_0940 0.56 +0.6 969,314 - Dsui_0940 0.57 +0.6 969,396 - Dsui_0940 0.62 -1.4 969,416 + Dsui_0940 0.63 -1.7 969,454 - +0.6 969,592 + Dsui_0940 0.73 -0.9 969,602 - Dsui_0940 0.73 -2.2 969,683 + Dsui_0940 0.78 -0.4 969,691 - Dsui_0940 0.79 +0.6 969,691 - Dsui_0940 0.79 -0.9 969,978 - -0.4 969,983 - +0.6 969,998 + -1.9 970,121 - +0.6 970,337 + +0.6 970,414 + Dsui_0941 0.46 -2.9 970,434 - +0.6 970,469 + Dsui_0941 0.59 +0.6 970,581 - Dsui_0941 0.85 +0.6 970,853 - +0.6 970,954 + Dsui_0942 0.28 +0.6 970,962 - Dsui_0942 0.29 +0.6 970,977 + Dsui_0942 0.32 +0.6 971,009 + Dsui_0942 0.37 -1.7 971,038 + +0.6
Or see this region's nucleotide sequence