Strain Fitness in Dechlorosoma suillum PS around Dsui_0867

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0866 and Dsui_0867 are separated by 176 nucleotidesDsui_0867 and Dsui_0868 overlap by 8 nucleotidesDsui_0868 and Dsui_0869 are separated by 3 nucleotidesDsui_0869 and Dsui_0870 overlap by 4 nucleotides Dsui_0866: Dsui_0866 - hypothetical protein, at 881,503 to 883,098 _0866 Dsui_0867: Dsui_0867 - deoxyguanosinetriphosphate triphosphohydrolase, putative, at 883,275 to 884,651 _0867 Dsui_0868: Dsui_0868 - hypothetical protein, at 884,644 to 884,985 _0868 Dsui_0869: Dsui_0869 - hypothetical protein, at 884,989 to 885,297 _0869 Dsui_0870: Dsui_0870 - putative membrane protein, at 885,294 to 885,701 _0870 Position (kb) 883 884 885Strain fitness (log2 ratio) -3 -2 -1 0 1at 882.444 kb on + strand, within Dsui_0866at 882.452 kb on - strand, within Dsui_0866at 882.462 kb on + strandat 882.512 kb on + strand, within Dsui_0866at 882.520 kb on - strand, within Dsui_0866at 882.520 kb on - strandat 882.614 kb on - strand, within Dsui_0866at 882.682 kb on - strand, within Dsui_0866at 882.799 kb on + strand, within Dsui_0866at 882.809 kb on - strand, within Dsui_0866at 882.822 kb on + strand, within Dsui_0866at 882.859 kb on - strand, within Dsui_0866at 882.939 kb on - strandat 882.976 kb on + strandat 882.984 kb on - strandat 883.007 kb on + strandat 883.015 kb on - strandat 883.015 kb on - strandat 883.088 kb on - strandat 883.103 kb on + strandat 883.106 kb on + strandat 883.107 kb on + strandat 883.152 kb on - strandat 883.261 kb on + strandat 883.305 kb on - strandat 883.334 kb on + strandat 883.397 kb on + strandat 883.423 kb on + strand, within Dsui_0867at 883.466 kb on - strandat 883.467 kb on + strand, within Dsui_0867at 883.475 kb on - strand, within Dsui_0867at 883.497 kb on - strand, within Dsui_0867at 883.540 kb on - strand, within Dsui_0867at 883.543 kb on + strand, within Dsui_0867at 883.550 kb on - strandat 883.748 kb on + strand, within Dsui_0867at 883.756 kb on - strand, within Dsui_0867at 883.843 kb on - strand, within Dsui_0867at 883.906 kb on + strand, within Dsui_0867at 883.914 kb on - strand, within Dsui_0867at 883.914 kb on - strand, within Dsui_0867at 883.939 kb on - strandat 883.941 kb on + strand, within Dsui_0867at 883.960 kb on - strandat 883.980 kb on - strandat 884.013 kb on + strand, within Dsui_0867at 884.035 kb on - strand, within Dsui_0867at 884.066 kb on - strand, within Dsui_0867at 884.100 kb on - strand, within Dsui_0867at 884.100 kb on - strand, within Dsui_0867at 884.101 kb on - strand, within Dsui_0867at 884.153 kb on + strand, within Dsui_0867at 884.162 kb on - strandat 884.260 kb on + strand, within Dsui_0867at 884.317 kb on + strand, within Dsui_0867at 884.317 kb on + strand, within Dsui_0867at 884.394 kb on + strand, within Dsui_0867at 884.394 kb on + strand, within Dsui_0867at 884.401 kb on - strand, within Dsui_0867at 884.479 kb on + strand, within Dsui_0867at 884.571 kb on - strandat 884.640 kb on + strandat 884.709 kb on + strand, within Dsui_0868at 884.709 kb on + strand, within Dsui_0868at 884.714 kb on + strand, within Dsui_0868at 884.717 kb on - strand, within Dsui_0868at 884.731 kb on + strand, within Dsui_0868at 884.752 kb on - strand, within Dsui_0868at 884.780 kb on + strand, within Dsui_0868at 884.804 kb on - strand, within Dsui_0868at 884.872 kb on + strand, within Dsui_0868at 884.900 kb on + strand, within Dsui_0868at 884.937 kb on + strand, within Dsui_0868at 884.995 kb on - strandat 884.995 kb on - strandat 885.144 kb on + strand, within Dsui_0869at 885.154 kb on + strand, within Dsui_0869at 885.157 kb on - strand, within Dsui_0869at 885.191 kb on - strand, within Dsui_0869at 885.211 kb on + strand, within Dsui_0869at 885.327 kb on - strandat 885.341 kb on + strand, within Dsui_0870at 885.355 kb on + strand, within Dsui_0870at 885.436 kb on - strand, within Dsui_0870at 885.445 kb on + strand, within Dsui_0870at 885.521 kb on + strand, within Dsui_0870at 885.543 kb on + strandat 885.610 kb on - strand, within Dsui_0870at 885.615 kb on - strand, within Dsui_0870at 885.615 kb on - strand, within Dsui_0870at 885.627 kb on + strand, within Dsui_0870

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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882,444 + Dsui_0866 0.59 -0.5
882,452 - Dsui_0866 0.59 -1.8
882,462 + +0.5
882,512 + Dsui_0866 0.63 -1.8
882,520 - Dsui_0866 0.64 -0.7
882,520 - +0.5
882,614 - Dsui_0866 0.70 +0.5
882,682 - Dsui_0866 0.74 +0.5
882,799 + Dsui_0866 0.81 -0.5
882,809 - Dsui_0866 0.82 -2.7
882,822 + Dsui_0866 0.83 -0.5
882,859 - Dsui_0866 0.85 -0.0
882,939 - -2.0
882,976 + +0.5
882,984 - +0.1
883,007 + +0.5
883,015 - -0.4
883,015 - -0.1
883,088 - +0.1
883,103 + +0.6
883,106 + -2.6
883,107 + -1.0
883,152 - -0.3
883,261 + -0.9
883,305 - +0.5
883,334 + +0.9
883,397 + +0.0
883,423 + Dsui_0867 0.11 +0.2
883,466 - +0.5
883,467 + Dsui_0867 0.14 -0.9
883,475 - Dsui_0867 0.15 -0.5
883,497 - Dsui_0867 0.16 +0.5
883,540 - Dsui_0867 0.19 -2.3
883,543 + Dsui_0867 0.19 -0.5
883,550 - -0.5
883,748 + Dsui_0867 0.34 -1.5
883,756 - Dsui_0867 0.35 -2.0
883,843 - Dsui_0867 0.41 -0.5
883,906 + Dsui_0867 0.46 -0.8
883,914 - Dsui_0867 0.46 +0.2
883,914 - Dsui_0867 0.46 +0.1
883,939 - +0.5
883,941 + Dsui_0867 0.48 +0.3
883,960 - +0.5
883,980 - +0.5
884,013 + Dsui_0867 0.54 +0.1
884,035 - Dsui_0867 0.55 -2.5
884,066 - Dsui_0867 0.57 +0.5
884,100 - Dsui_0867 0.60 +0.1
884,100 - Dsui_0867 0.60 +0.5
884,101 - Dsui_0867 0.60 +1.1
884,153 + Dsui_0867 0.64 -0.3
884,162 - +0.5
884,260 + Dsui_0867 0.72 -0.2
884,317 + Dsui_0867 0.76 -0.3
884,317 + Dsui_0867 0.76 -0.3
884,394 + Dsui_0867 0.81 -0.1
884,394 + Dsui_0867 0.81 +0.1
884,401 - Dsui_0867 0.82 -1.0
884,479 + Dsui_0867 0.87 -0.0
884,571 - -0.6
884,640 + -1.1
884,709 + Dsui_0868 0.19 -0.4
884,709 + Dsui_0868 0.19 -0.9
884,714 + Dsui_0868 0.20 -1.4
884,717 - Dsui_0868 0.21 +0.5
884,731 + Dsui_0868 0.25 -1.2
884,752 - Dsui_0868 0.32 -0.2
884,780 + Dsui_0868 0.40 -1.5
884,804 - Dsui_0868 0.47 +0.4
884,872 + Dsui_0868 0.67 -0.2
884,900 + Dsui_0868 0.75 -1.0
884,937 + Dsui_0868 0.86 -2.0
884,995 - -0.2
884,995 - -0.2
885,144 + Dsui_0869 0.50 -2.0
885,154 + Dsui_0869 0.53 -2.0
885,157 - Dsui_0869 0.54 -1.7
885,191 - Dsui_0869 0.65 -1.1
885,211 + Dsui_0869 0.72 -0.3
885,327 - -1.6
885,341 + Dsui_0870 0.12 +0.5
885,355 + Dsui_0870 0.15 -1.0
885,436 - Dsui_0870 0.35 -2.7
885,445 + Dsui_0870 0.37 +0.5
885,521 + Dsui_0870 0.56 -0.5
885,543 + +0.5
885,610 - Dsui_0870 0.77 -3.2
885,615 - Dsui_0870 0.79 -2.8
885,615 - Dsui_0870 0.79 -2.7
885,627 + Dsui_0870 0.82 +0.5

Or see this region's nucleotide sequence