Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0799 and Dsui_0800 are separated by 70 nucleotides Dsui_0800 and Dsui_0801 are separated by 231 nucleotides Dsui_0801 and Dsui_0802 are separated by 18 nucleotides Dsui_0802 and Dsui_0803 are separated by 117 nucleotides
Dsui_0799: Dsui_0799 - succinate CoA transferase, at 804,811 to 806,370
_0799
Dsui_0800: Dsui_0800 - hypothetical protein (DUF2059), at 806,441 to 806,956
_0800
Dsui_0801: Dsui_0801 - transcriptional regulator/sugar kinase, at 807,188 to 808,078
_0801
Dsui_0802: Dsui_0802 - hypothetical protein, at 808,097 to 808,798
_0802
Dsui_0803: Dsui_0803 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 808,916 to 811,168
_0803
Position (kb) 807
808
809 Strain fitness (log2 ratio) -2
-1
0
1 at 806.255 kb on + strand at 806.263 kb on - strand at 806.275 kb on + strand at 806.312 kb on - strand at 806.357 kb on - strand at 806.364 kb on + strand at 806.401 kb on - strand at 806.415 kb on - strand at 806.439 kb on + strand at 806.439 kb on + strand at 806.447 kb on - strand at 806.491 kb on - strand at 806.493 kb on + strand, within Dsui_0800 at 806.501 kb on - strand, within Dsui_0800 at 806.501 kb on - strand, within Dsui_0800 at 806.543 kb on + strand, within Dsui_0800 at 806.601 kb on - strand, within Dsui_0800 at 806.610 kb on + strand at 806.684 kb on + strand, within Dsui_0800 at 806.784 kb on + strand, within Dsui_0800 at 806.797 kb on - strand, within Dsui_0800 at 806.802 kb on + strand, within Dsui_0800 at 806.809 kb on - strand, within Dsui_0800 at 806.810 kb on - strand, within Dsui_0800 at 806.901 kb on + strand, within Dsui_0800 at 806.946 kb on + strand at 806.988 kb on - strand at 807.170 kb on - strand at 807.178 kb on + strand at 807.186 kb on - strand at 807.228 kb on - strand at 807.328 kb on - strand, within Dsui_0801 at 807.344 kb on + strand, within Dsui_0801 at 807.460 kb on + strand, within Dsui_0801 at 807.510 kb on + strand, within Dsui_0801 at 807.510 kb on + strand, within Dsui_0801 at 807.510 kb on + strand, within Dsui_0801 at 807.582 kb on - strand, within Dsui_0801 at 807.604 kb on - strand, within Dsui_0801 at 807.880 kb on + strand, within Dsui_0801 at 807.880 kb on + strand, within Dsui_0801 at 807.888 kb on - strand, within Dsui_0801 at 807.889 kb on - strand at 807.955 kb on - strand at 807.955 kb on - strand, within Dsui_0801 at 807.976 kb on + strand, within Dsui_0801 at 807.994 kb on - strand at 808.011 kb on + strand at 808.021 kb on + strand at 808.132 kb on + strand at 808.153 kb on - strand at 808.186 kb on - strand, within Dsui_0802 at 808.214 kb on - strand, within Dsui_0802 at 808.340 kb on - strand, within Dsui_0802 at 808.341 kb on + strand, within Dsui_0802 at 808.382 kb on - strand, within Dsui_0802 at 808.393 kb on - strand at 808.393 kb on - strand, within Dsui_0802 at 808.624 kb on - strand, within Dsui_0802 at 808.671 kb on - strand, within Dsui_0802 at 808.691 kb on - strand, within Dsui_0802 at 808.776 kb on + strand at 808.879 kb on - strand at 808.891 kb on + strand at 808.923 kb on - strand at 808.940 kb on + strand at 808.946 kb on + strand at 809.005 kb on + strand at 809.012 kb on + strand at 809.020 kb on - strand at 809.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 806,255 + +0.7 806,263 - -0.4 806,275 + +0.6 806,312 - -1.4 806,357 - +0.6 806,364 + +0.1 806,401 - -2.4 806,415 - -0.8 806,439 + +0.6 806,439 + -1.4 806,447 - -1.0 806,491 - +0.3 806,493 + Dsui_0800 0.10 +0.6 806,501 - Dsui_0800 0.12 -0.3 806,501 - Dsui_0800 0.12 -0.7 806,543 + Dsui_0800 0.20 +0.6 806,601 - Dsui_0800 0.31 +1.0 806,610 + +0.6 806,684 + Dsui_0800 0.47 -1.4 806,784 + Dsui_0800 0.66 -1.4 806,797 - Dsui_0800 0.69 +0.3 806,802 + Dsui_0800 0.70 +0.6 806,809 - Dsui_0800 0.71 +0.5 806,810 - Dsui_0800 0.72 +0.1 806,901 + Dsui_0800 0.89 +0.6 806,946 + +0.6 806,988 - -1.3 807,170 - -0.4 807,178 + +0.7 807,186 - -1.8 807,228 - +0.6 807,328 - Dsui_0801 0.16 +0.6 807,344 + Dsui_0801 0.18 +1.1 807,460 + Dsui_0801 0.31 +0.5 807,510 + Dsui_0801 0.36 +0.3 807,510 + Dsui_0801 0.36 -0.1 807,510 + Dsui_0801 0.36 -0.6 807,582 - Dsui_0801 0.44 +0.6 807,604 - Dsui_0801 0.47 -1.0 807,880 + Dsui_0801 0.78 -1.0 807,880 + Dsui_0801 0.78 +0.1 807,888 - Dsui_0801 0.79 -1.8 807,889 - -0.4 807,955 - +0.6 807,955 - Dsui_0801 0.86 -1.8 807,976 + Dsui_0801 0.88 -0.9 807,994 - +0.6 808,011 + -0.2 808,021 + -0.0 808,132 + +0.1 808,153 - +0.6 808,186 - Dsui_0802 0.13 -1.0 808,214 - Dsui_0802 0.17 -1.4 808,340 - Dsui_0802 0.35 -1.0 808,341 + Dsui_0802 0.35 -0.6 808,382 - Dsui_0802 0.41 -2.6 808,393 - -1.0 808,393 - Dsui_0802 0.42 -0.4 808,624 - Dsui_0802 0.75 -1.0 808,671 - Dsui_0802 0.82 +0.6 808,691 - Dsui_0802 0.85 -0.2 808,776 + +1.0 808,879 - +0.6 808,891 + +1.6 808,923 - -1.8 808,940 + +0.6 808,946 + -0.3 809,005 + +0.2 809,012 + +0.1 809,020 - +0.6 809,030 - -0.4
Or see this region's nucleotide sequence