Strain Fitness in Dechlorosoma suillum PS around Dsui_0748

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0747 and Dsui_0748 are separated by 173 nucleotidesDsui_0748 and Dsui_0749 overlap by 4 nucleotides Dsui_0747: Dsui_0747 - glutamate--cysteine ligase, at 744,850 to 746,130 _0747 Dsui_0748: Dsui_0748 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 746,304 to 747,302 _0748 Dsui_0749: Dsui_0749 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 747,299 to 750,160 _0749 Position (kb) 746 747 748Strain fitness (log2 ratio) -3 -2 -1 0 1at 745.607 kb on - strand, within Dsui_0747at 745.614 kb on + strandat 745.683 kb on + strand, within Dsui_0747at 745.701 kb on + strand, within Dsui_0747at 745.709 kb on - strand, within Dsui_0747at 745.976 kb on - strand, within Dsui_0747at 746.091 kb on + strandat 746.301 kb on + strandat 746.301 kb on + strandat 746.301 kb on + strandat 746.309 kb on - strandat 746.309 kb on - strandat 746.309 kb on - strandat 746.309 kb on - strandat 746.358 kb on + strandat 746.493 kb on - strand, within Dsui_0748at 746.557 kb on - strand, within Dsui_0748at 746.593 kb on + strand, within Dsui_0748at 746.614 kb on + strand, within Dsui_0748at 746.667 kb on + strand, within Dsui_0748at 746.710 kb on - strandat 746.710 kb on - strand, within Dsui_0748at 746.710 kb on - strandat 746.754 kb on - strandat 746.783 kb on + strand, within Dsui_0748at 746.862 kb on + strand, within Dsui_0748at 746.919 kb on + strand, within Dsui_0748at 746.940 kb on + strand, within Dsui_0748at 747.108 kb on - strand, within Dsui_0748at 747.110 kb on + strand, within Dsui_0748at 747.110 kb on + strand, within Dsui_0748at 747.127 kb on + strand, within Dsui_0748at 747.127 kb on + strand, within Dsui_0748at 747.162 kb on - strand, within Dsui_0748at 747.311 kb on + strandat 747.404 kb on + strandat 747.523 kb on + strandat 747.576 kb on + strandat 747.580 kb on + strandat 747.606 kb on - strand, within Dsui_0749at 747.655 kb on - strand, within Dsui_0749at 747.698 kb on + strand, within Dsui_0749at 747.724 kb on + strand, within Dsui_0749at 747.797 kb on - strandat 747.813 kb on - strand, within Dsui_0749at 747.868 kb on - strandat 747.898 kb on - strand, within Dsui_0749at 747.902 kb on + strand, within Dsui_0749at 748.068 kb on + strand, within Dsui_0749at 748.070 kb on - strand, within Dsui_0749at 748.099 kb on + strand, within Dsui_0749at 748.138 kb on - strandat 748.148 kb on - strandat 748.191 kb on + strand, within Dsui_0749at 748.199 kb on + strand, within Dsui_0749at 748.239 kb on + strand, within Dsui_0749at 748.270 kb on - strand, within Dsui_0749at 748.271 kb on - strand, within Dsui_0749at 748.302 kb on - strand, within Dsui_0749

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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745,607 - Dsui_0747 0.59 -2.0
745,614 + -0.5
745,683 + Dsui_0747 0.65 -1.1
745,701 + Dsui_0747 0.66 -1.8
745,709 - Dsui_0747 0.67 -3.6
745,976 - Dsui_0747 0.88 -1.7
746,091 + -0.5
746,301 + +1.5
746,301 + +0.1
746,301 + +0.7
746,309 - -1.5
746,309 - +0.5
746,309 - +0.5
746,309 - +0.5
746,358 + -0.5
746,493 - Dsui_0748 0.19 -2.3
746,557 - Dsui_0748 0.25 -1.1
746,593 + Dsui_0748 0.29 +0.6
746,614 + Dsui_0748 0.31 -0.3
746,667 + Dsui_0748 0.36 -0.4
746,710 - +0.5
746,710 - Dsui_0748 0.41 -1.1
746,710 - +0.5
746,754 - +0.5
746,783 + Dsui_0748 0.48 +0.1
746,862 + Dsui_0748 0.56 -0.7
746,919 + Dsui_0748 0.62 +0.0
746,940 + Dsui_0748 0.64 -0.4
747,108 - Dsui_0748 0.80 -1.1
747,110 + Dsui_0748 0.81 +0.5
747,110 + Dsui_0748 0.81 -1.1
747,127 + Dsui_0748 0.82 -0.7
747,127 + Dsui_0748 0.82 +1.0
747,162 - Dsui_0748 0.86 -2.3
747,311 + -0.0
747,404 + -1.8
747,523 + +0.5
747,576 + -0.9
747,580 + -1.8
747,606 - Dsui_0749 0.11 -1.1
747,655 - Dsui_0749 0.12 -0.5
747,698 + Dsui_0749 0.14 -0.4
747,724 + Dsui_0749 0.15 +0.3
747,797 - +0.5
747,813 - Dsui_0749 0.18 -1.1
747,868 - -0.5
747,898 - Dsui_0749 0.21 -2.3
747,902 + Dsui_0749 0.21 -0.8
748,068 + Dsui_0749 0.27 -0.4
748,070 - Dsui_0749 0.27 -0.5
748,099 + Dsui_0749 0.28 -1.0
748,138 - -0.5
748,148 - +0.5
748,191 + Dsui_0749 0.31 +0.3
748,199 + Dsui_0749 0.31 -1.5
748,239 + Dsui_0749 0.33 -1.1
748,270 - Dsui_0749 0.34 -1.5
748,271 - Dsui_0749 0.34 -1.8
748,302 - Dsui_0749 0.35 +0.5

Or see this region's nucleotide sequence