Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0704 and Dsui_0705 are separated by 66 nucleotides Dsui_0705 and Dsui_0706 are separated by 65 nucleotides Dsui_0706 and Dsui_0707 overlap by 4 nucleotides
Dsui_0704: Dsui_0704 - RNA polymerase sigma-54 factor, at 698,768 to 700,246
_0704
Dsui_0705: Dsui_0705 - ABC-type (unclassified) transport system, ATPase component, at 700,313 to 701,059
_0705
Dsui_0706: Dsui_0706 - hypothetical protein, at 701,125 to 701,580
_0706
Dsui_0707: Dsui_0707 - protein RecA, at 701,577 to 702,599
_0707
Position (kb) 701
702 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 700.200 kb on - strand at 700.212 kb on - strand at 700.282 kb on + strand at 700.302 kb on + strand at 701.087 kb on - strand at 701.100 kb on + strand at 701.109 kb on - strand at 701.135 kb on + strand at 701.452 kb on + strand at 701.532 kb on - strand, within Dsui_0706 at 701.532 kb on - strand, within Dsui_0706 at 701.599 kb on + strand at 701.605 kb on + strand at 701.605 kb on + strand at 701.616 kb on + strand at 701.668 kb on + strand at 701.872 kb on - strand, within Dsui_0707 at 702.020 kb on + strand, within Dsui_0707 at 702.046 kb on - strand, within Dsui_0707 at 702.067 kb on + strand at 702.085 kb on - strand, within Dsui_0707 at 702.190 kb on - strand, within Dsui_0707 at 702.344 kb on + strand at 702.380 kb on - strand, within Dsui_0707 at 702.393 kb on + strand, within Dsui_0707 at 702.469 kb on - strand, within Dsui_0707
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 700,200 - +0.7 700,212 - +0.6 700,282 + +1.8 700,302 + -1.6 701,087 - -1.0 701,100 + +1.1 701,109 - +0.1 701,135 + -0.5 701,452 + -1.1 701,532 - Dsui_0706 0.89 -2.1 701,532 - Dsui_0706 0.89 -2.6 701,599 + -0.5 701,605 + -0.5 701,605 + -0.5 701,616 + +0.5 701,668 + +0.5 701,872 - Dsui_0707 0.29 -4.5 702,020 + Dsui_0707 0.43 +0.5 702,046 - Dsui_0707 0.46 -3.1 702,067 + -0.5 702,085 - Dsui_0707 0.50 -6.1 702,190 - Dsui_0707 0.60 -6.5 702,344 + +0.5 702,380 - Dsui_0707 0.78 -4.2 702,393 + Dsui_0707 0.80 -0.5 702,469 - Dsui_0707 0.87 -3.4
Or see this region's nucleotide sequence