Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0612 and Dsui_0613 are separated by 242 nucleotides Dsui_0613 and Dsui_0614 overlap by 4 nucleotides Dsui_0614 and Dsui_0615 overlap by 38 nucleotides
Dsui_0612: Dsui_0612 - hypothetical protein, at 608,479 to 608,775
_0612
Dsui_0613: Dsui_0613 - uncharacterized protein SCO1/SenC/PrrC, at 609,018 to 609,569
_0613
Dsui_0614: Dsui_0614 - hypothetical protein, at 609,566 to 609,901
_0614
Dsui_0615: Dsui_0615 - ABC-type transport system, involved in lipoprotein release, permease component, at 609,864 to 611,000
_0615
Position (kb) 609
610 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 608.976 kb on + strand at 609.066 kb on - strand at 609.273 kb on + strand, within Dsui_0613 at 609.560 kb on - strand at 609.561 kb on - strand at 609.622 kb on + strand, within Dsui_0614 at 609.768 kb on - strand, within Dsui_0614 at 609.869 kb on + strand at 609.905 kb on + strand at 609.923 kb on - strand at 609.949 kb on - strand at 610.053 kb on - strand, within Dsui_0615 at 610.081 kb on + strand, within Dsui_0615 at 610.166 kb on + strand, within Dsui_0615 at 610.181 kb on + strand, within Dsui_0615 at 610.191 kb on + strand, within Dsui_0615 at 610.200 kb on - strand, within Dsui_0615 at 610.328 kb on - strand, within Dsui_0615 at 610.375 kb on - strand, within Dsui_0615 at 610.552 kb on - strand, within Dsui_0615 at 610.858 kb on - strand, within Dsui_0615
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 608,976 + -0.7 609,066 - +0.5 609,273 + Dsui_0613 0.46 -0.9 609,560 - -1.8 609,561 - -0.5 609,622 + Dsui_0614 0.17 -1.8 609,768 - Dsui_0614 0.60 -1.8 609,869 + -0.9 609,905 + +0.0 609,923 - -0.5 609,949 - +0.5 610,053 - Dsui_0615 0.17 -2.5 610,081 + Dsui_0615 0.19 -0.7 610,166 + Dsui_0615 0.27 +0.1 610,181 + Dsui_0615 0.28 -1.0 610,191 + Dsui_0615 0.29 -0.2 610,200 - Dsui_0615 0.30 -2.3 610,328 - Dsui_0615 0.41 -1.8 610,375 - Dsui_0615 0.45 -2.7 610,552 - Dsui_0615 0.61 -0.5 610,858 - Dsui_0615 0.87 -2.8
Or see this region's nucleotide sequence