Strain Fitness in Dechlorosoma suillum PS around Dsui_0596

Experiment: ALP with Cisplatin 0.0007 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0593 and Dsui_0594 overlap by 8 nucleotidesDsui_0594 and Dsui_0595 overlap by 8 nucleotidesDsui_0595 and Dsui_0596 overlap by 8 nucleotidesDsui_0596 and Dsui_0597 are separated by 5 nucleotides Dsui_0593: Dsui_0593 - putative transcriptional regulator, at 591,341 to 591,901 _0593 Dsui_0594: Dsui_0594 - RNAse H-fold protein YqgF, at 591,894 to 592,370 _0594 Dsui_0595: Dsui_0595 - pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, at 592,363 to 592,884 _0595 Dsui_0596: Dsui_0596 - aspartate carbamoyltransferase, at 592,877 to 593,860 _0596 Dsui_0597: Dsui_0597 - dihydroorotase, multifunctional complex type, at 593,866 to 595,110 _0597 Position (kb) 592 593 594Strain fitness (log2 ratio) -1 0 1at 591.895 kb on + strandat 591.896 kb on + strandat 592.472 kb on + strand, within Dsui_0595at 592.604 kb on + strand, within Dsui_0595at 592.644 kb on + strand, within Dsui_0595at 592.656 kb on + strand, within Dsui_0595

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
remove
591,895 + +0.1
591,896 + -0.5
592,472 + Dsui_0595 0.21 -1.3
592,604 + Dsui_0595 0.46 -1.4
592,644 + Dsui_0595 0.54 -0.4
592,656 + Dsui_0595 0.56 -0.9

Or see this region's nucleotide sequence