Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0423 and Dsui_0424 are separated by 213 nucleotides Dsui_0424 and Dsui_0425 overlap by 4 nucleotides Dsui_0425 and Dsui_0426 are separated by 6 nucleotides
Dsui_0423: Dsui_0423 - putative permease, at 426,417 to 427,475
_0423
Dsui_0424: Dsui_0424 - phosphoketolase, at 427,689 to 430,109
_0424
Dsui_0425: Dsui_0425 - putative Fe-S oxidoreductase, at 430,106 to 430,381
_0425
Dsui_0426: Dsui_0426 - transcriptional regulator, at 430,388 to 431,302
_0426
Position (kb) 427
428
429
430
431 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 426.691 kb on - strand, within Dsui_0423 at 426.700 kb on + strand at 426.737 kb on + strand at 426.750 kb on - strand, within Dsui_0423 at 426.753 kb on + strand, within Dsui_0423 at 426.756 kb on - strand, within Dsui_0423 at 426.845 kb on - strand, within Dsui_0423 at 426.850 kb on - strand, within Dsui_0423 at 426.917 kb on - strand, within Dsui_0423 at 427.006 kb on - strand, within Dsui_0423 at 427.067 kb on - strand, within Dsui_0423 at 427.091 kb on + strand, within Dsui_0423 at 427.184 kb on - strand, within Dsui_0423 at 427.282 kb on - strand, within Dsui_0423 at 427.543 kb on + strand at 427.543 kb on + strand at 427.828 kb on + strand at 427.908 kb on + strand at 427.931 kb on - strand, within Dsui_0424 at 428.319 kb on - strand, within Dsui_0424 at 428.324 kb on - strand, within Dsui_0424 at 428.341 kb on - strand at 428.454 kb on + strand, within Dsui_0424 at 428.459 kb on + strand, within Dsui_0424 at 428.599 kb on + strand, within Dsui_0424 at 428.654 kb on + strand, within Dsui_0424 at 428.973 kb on - strand, within Dsui_0424 at 429.087 kb on + strand, within Dsui_0424 at 429.124 kb on + strand, within Dsui_0424 at 429.288 kb on - strand at 429.306 kb on - strand, within Dsui_0424 at 429.352 kb on + strand, within Dsui_0424 at 429.381 kb on + strand, within Dsui_0424 at 429.384 kb on - strand, within Dsui_0424 at 429.442 kb on + strand, within Dsui_0424 at 429.522 kb on + strand, within Dsui_0424 at 429.676 kb on + strand, within Dsui_0424 at 429.715 kb on + strand, within Dsui_0424 at 429.758 kb on + strand, within Dsui_0424 at 429.758 kb on + strand, within Dsui_0424 at 429.776 kb on - strand, within Dsui_0424 at 429.877 kb on + strand at 429.885 kb on - strand at 429.915 kb on - strand at 429.915 kb on - strand at 429.917 kb on + strand at 429.943 kb on + strand at 430.020 kb on - strand at 430.020 kb on - strand at 430.060 kb on + strand at 430.096 kb on - strand at 430.103 kb on + strand at 430.118 kb on + strand at 430.218 kb on + strand, within Dsui_0425 at 430.235 kb on + strand, within Dsui_0425 at 430.439 kb on + strand at 430.558 kb on + strand, within Dsui_0426 at 430.575 kb on + strand, within Dsui_0426 at 430.583 kb on - strand, within Dsui_0426 at 430.600 kb on - strand, within Dsui_0426 at 430.652 kb on + strand, within Dsui_0426 at 430.655 kb on - strand, within Dsui_0426 at 430.695 kb on - strand, within Dsui_0426 at 430.700 kb on - strand, within Dsui_0426 at 430.811 kb on - strand, within Dsui_0426 at 430.878 kb on - strand, within Dsui_0426 at 430.883 kb on - strand, within Dsui_0426 at 430.996 kb on - strand, within Dsui_0426 at 431.055 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 426,691 - Dsui_0423 0.26 -3.9 426,700 + +0.5 426,737 + +0.5 426,750 - Dsui_0423 0.31 -5.8 426,753 + Dsui_0423 0.32 -0.5 426,756 - Dsui_0423 0.32 -5.6 426,845 - Dsui_0423 0.40 -6.6 426,850 - Dsui_0423 0.41 -4.0 426,917 - Dsui_0423 0.47 -5.4 427,006 - Dsui_0423 0.56 -4.2 427,067 - Dsui_0423 0.61 -2.7 427,091 + Dsui_0423 0.64 +0.5 427,184 - Dsui_0423 0.72 -4.2 427,282 - Dsui_0423 0.82 -2.7 427,543 + +0.5 427,543 + +0.5 427,828 + -0.1 427,908 + -0.2 427,931 - Dsui_0424 0.10 -1.9 428,319 - Dsui_0424 0.26 -1.1 428,324 - Dsui_0424 0.26 -0.5 428,341 - +0.5 428,454 + Dsui_0424 0.32 -0.2 428,459 + Dsui_0424 0.32 -1.9 428,599 + Dsui_0424 0.38 -0.7 428,654 + Dsui_0424 0.40 +1.6 428,973 - Dsui_0424 0.53 -1.9 429,087 + Dsui_0424 0.58 -0.3 429,124 + Dsui_0424 0.59 +1.0 429,288 - +0.5 429,306 - Dsui_0424 0.67 -1.1 429,352 + Dsui_0424 0.69 -0.6 429,381 + Dsui_0424 0.70 -0.4 429,384 - Dsui_0424 0.70 -1.1 429,442 + Dsui_0424 0.72 -0.1 429,522 + Dsui_0424 0.76 -0.2 429,676 + Dsui_0424 0.82 -0.2 429,715 + Dsui_0424 0.84 +0.8 429,758 + Dsui_0424 0.85 -0.5 429,758 + Dsui_0424 0.85 +0.5 429,776 - Dsui_0424 0.86 -2.7 429,877 + -0.5 429,885 - -3.5 429,915 - -0.5 429,915 - -2.0 429,917 + -0.2 429,943 + +1.6 430,020 - +0.5 430,020 - +0.5 430,060 + -0.4 430,096 - -2.1 430,103 + -0.5 430,118 + -0.4 430,218 + Dsui_0425 0.41 +0.1 430,235 + Dsui_0425 0.47 +0.3 430,439 + -0.6 430,558 + Dsui_0426 0.19 -1.2 430,575 + Dsui_0426 0.20 -0.5 430,583 - Dsui_0426 0.21 -0.5 430,600 - Dsui_0426 0.23 +0.1 430,652 + Dsui_0426 0.29 +0.9 430,655 - Dsui_0426 0.29 -0.3 430,695 - Dsui_0426 0.34 -0.4 430,700 - Dsui_0426 0.34 -0.2 430,811 - Dsui_0426 0.46 +0.1 430,878 - Dsui_0426 0.54 -1.9 430,883 - Dsui_0426 0.54 -0.3 430,996 - Dsui_0426 0.66 -0.1 431,055 + +0.5
Or see this region's nucleotide sequence