Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0315 and Dsui_0316 are separated by 92 nucleotides Dsui_0316 and Dsui_0317 are separated by 170 nucleotides Dsui_0317 and Dsui_0318 are separated by 17 nucleotides
Dsui_0315: Dsui_0315 - Protein of unknown function (DUF2802), at 317,103 to 317,657
_0315
Dsui_0316: Dsui_0316 - hypothetical protein, at 317,750 to 318,253
_0316
Dsui_0317: Dsui_0317 - acetyl-CoA acetyltransferase, at 318,424 to 319,623
_0317
Dsui_0318: Dsui_0318 - 3-hydroxyacyl-CoA dehydrogenase, at 319,641 to 322,028
_0318
Position (kb) 318
319
320 Strain fitness (log2 ratio) -2
-1
0
1
2 at 317.427 kb on + strand at 317.427 kb on + strand, within Dsui_0315 at 317.435 kb on - strand, within Dsui_0315 at 317.435 kb on - strand, within Dsui_0315 at 317.435 kb on - strand, within Dsui_0315 at 317.435 kb on - strand, within Dsui_0315 at 317.616 kb on - strand at 317.633 kb on + strand at 317.745 kb on - strand at 317.747 kb on + strand at 317.806 kb on + strand, within Dsui_0316 at 317.821 kb on - strand at 317.821 kb on - strand, within Dsui_0316 at 317.822 kb on - strand, within Dsui_0316 at 317.850 kb on + strand, within Dsui_0316 at 317.961 kb on - strand, within Dsui_0316 at 318.265 kb on + strand at 318.339 kb on + strand at 318.339 kb on + strand at 318.347 kb on - strand at 318.390 kb on + strand at 318.439 kb on - strand at 318.439 kb on - strand at 318.449 kb on - strand at 318.623 kb on - strand, within Dsui_0317 at 318.708 kb on - strand, within Dsui_0317 at 318.798 kb on + strand, within Dsui_0317 at 318.917 kb on + strand, within Dsui_0317 at 318.995 kb on + strand, within Dsui_0317 at 319.032 kb on + strand, within Dsui_0317 at 319.033 kb on - strand, within Dsui_0317 at 319.034 kb on - strand, within Dsui_0317 at 319.083 kb on + strand at 319.135 kb on - strand, within Dsui_0317 at 319.137 kb on + strand, within Dsui_0317 at 319.140 kb on - strand, within Dsui_0317 at 319.209 kb on + strand, within Dsui_0317 at 319.237 kb on - strand, within Dsui_0317 at 319.283 kb on - strand, within Dsui_0317 at 319.285 kb on + strand at 319.319 kb on + strand, within Dsui_0317 at 319.401 kb on - strand, within Dsui_0317 at 319.476 kb on + strand, within Dsui_0317 at 319.544 kb on + strand at 319.561 kb on - strand at 319.595 kb on + strand at 319.688 kb on - strand at 319.694 kb on - strand at 319.694 kb on - strand at 319.702 kb on + strand at 319.702 kb on + strand at 319.702 kb on + strand at 319.762 kb on + strand at 319.780 kb on - strand at 319.858 kb on - strand at 319.966 kb on - strand, within Dsui_0318 at 319.986 kb on + strand, within Dsui_0318 at 320.029 kb on + strand, within Dsui_0318 at 320.061 kb on - strand, within Dsui_0318 at 320.079 kb on + strand, within Dsui_0318 at 320.111 kb on - strand, within Dsui_0318 at 320.191 kb on - strand, within Dsui_0318 at 320.208 kb on - strand, within Dsui_0318 at 320.289 kb on - strand, within Dsui_0318 at 320.385 kb on - strand, within Dsui_0318 at 320.394 kb on + strand, within Dsui_0318 at 320.402 kb on - strand, within Dsui_0318 at 320.531 kb on + strand, within Dsui_0318 at 320.531 kb on + strand, within Dsui_0318 at 320.539 kb on - strand, within Dsui_0318
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 317,427 + +0.5 317,427 + Dsui_0315 0.58 -1.1 317,435 - Dsui_0315 0.60 -0.7 317,435 - Dsui_0315 0.60 -0.8 317,435 - Dsui_0315 0.60 -1.0 317,435 - Dsui_0315 0.60 -0.6 317,616 - -1.0 317,633 + +0.5 317,745 - -2.1 317,747 + +0.5 317,806 + Dsui_0316 0.11 +0.5 317,821 - +0.5 317,821 - Dsui_0316 0.14 -2.7 317,822 - Dsui_0316 0.14 +0.5 317,850 + Dsui_0316 0.20 -0.1 317,961 - Dsui_0316 0.42 +0.5 318,265 + -0.5 318,339 + -0.5 318,339 + +0.5 318,347 - -0.5 318,390 + +0.5 318,439 - -0.6 318,439 - -1.8 318,449 - -0.3 318,623 - Dsui_0317 0.17 -1.5 318,708 - Dsui_0317 0.24 -0.6 318,798 + Dsui_0317 0.31 -1.1 318,917 + Dsui_0317 0.41 -1.5 318,995 + Dsui_0317 0.48 -1.1 319,032 + Dsui_0317 0.51 -1.8 319,033 - Dsui_0317 0.51 -0.9 319,034 - Dsui_0317 0.51 -1.1 319,083 + +0.5 319,135 - Dsui_0317 0.59 -1.2 319,137 + Dsui_0317 0.59 -2.5 319,140 - Dsui_0317 0.60 -1.0 319,209 + Dsui_0317 0.65 +0.5 319,237 - Dsui_0317 0.68 +1.8 319,283 - Dsui_0317 0.72 -0.5 319,285 + +0.5 319,319 + Dsui_0317 0.75 -2.5 319,401 - Dsui_0317 0.81 -0.6 319,476 + Dsui_0317 0.88 -1.1 319,544 + -1.5 319,561 - -2.0 319,595 + -1.1 319,688 - -1.1 319,694 - +0.5 319,694 - -2.1 319,702 + +0.5 319,702 + -0.5 319,702 + -1.1 319,762 + +0.5 319,780 - -2.3 319,858 - -1.4 319,966 - Dsui_0318 0.14 -0.3 319,986 + Dsui_0318 0.14 +0.5 320,029 + Dsui_0318 0.16 +0.5 320,061 - Dsui_0318 0.18 -0.4 320,079 + Dsui_0318 0.18 +0.5 320,111 - Dsui_0318 0.20 -1.1 320,191 - Dsui_0318 0.23 -1.4 320,208 - Dsui_0318 0.24 -2.1 320,289 - Dsui_0318 0.27 -1.1 320,385 - Dsui_0318 0.31 -0.4 320,394 + Dsui_0318 0.32 -2.1 320,402 - Dsui_0318 0.32 -1.8 320,531 + Dsui_0318 0.37 -0.5 320,531 + Dsui_0318 0.37 -1.1 320,539 - Dsui_0318 0.38 -2.3
Or see this region's nucleotide sequence