Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0303 and Dsui_0304 are separated by 36 nucleotides Dsui_0304 and Dsui_0305 are separated by 53 nucleotides Dsui_0305 and Dsui_0306 are separated by 136 nucleotides Dsui_0306 and Dsui_0307 are separated by 31 nucleotides
Dsui_0303: Dsui_0303 - 4-hydroxybenzoate polyprenyl transferase, proteobacterial, at 304,986 to 305,897
_0303
Dsui_0304: Dsui_0304 - hypothetical protein, at 305,934 to 306,182
_0304
Dsui_0305: Dsui_0305 - transcriptional regulator, at 306,236 to 307,129
_0305
Dsui_0306: Dsui_0306 - putative permease, at 307,266 to 308,054
_0306
Dsui_0307: Dsui_0307 - methyl-accepting chemotaxis protein, at 308,086 to 309,693
_0307
Position (kb) 306
307
308 Strain fitness (log2 ratio) -2
-1
0
1 at 305.992 kb on - strand, within Dsui_0304 at 306.044 kb on + strand at 306.100 kb on - strand, within Dsui_0304 at 306.103 kb on + strand at 306.107 kb on + strand, within Dsui_0304 at 306.185 kb on - strand at 306.259 kb on - strand at 306.286 kb on - strand at 306.323 kb on - strand at 306.333 kb on + strand, within Dsui_0305 at 306.424 kb on + strand, within Dsui_0305 at 306.481 kb on + strand at 306.665 kb on - strand, within Dsui_0305 at 306.692 kb on + strand at 306.715 kb on - strand, within Dsui_0305 at 306.733 kb on + strand, within Dsui_0305 at 306.770 kb on + strand at 306.918 kb on + strand at 306.988 kb on + strand, within Dsui_0305 at 307.077 kb on - strand at 307.109 kb on + strand at 307.369 kb on - strand, within Dsui_0306 at 307.597 kb on - strand, within Dsui_0306 at 307.665 kb on + strand, within Dsui_0306 at 307.714 kb on - strand at 307.803 kb on - strand, within Dsui_0306 at 307.848 kb on - strand, within Dsui_0306 at 307.936 kb on + strand, within Dsui_0306 at 308.070 kb on + strand at 308.120 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 305,992 - Dsui_0304 0.23 -1.1 306,044 + +0.5 306,100 - Dsui_0304 0.67 -0.4 306,103 + +0.5 306,107 + Dsui_0304 0.69 -0.5 306,185 - -0.8 306,259 - +0.6 306,286 - -1.0 306,323 - -1.4 306,333 + Dsui_0305 0.11 -1.8 306,424 + Dsui_0305 0.21 -0.5 306,481 + -0.5 306,665 - Dsui_0305 0.48 -0.6 306,692 + +0.5 306,715 - Dsui_0305 0.54 -1.3 306,733 + Dsui_0305 0.56 -0.5 306,770 + -0.5 306,918 + +0.5 306,988 + Dsui_0305 0.84 -1.1 307,077 - -0.5 307,109 + +0.5 307,369 - Dsui_0306 0.13 +0.5 307,597 - Dsui_0306 0.42 +0.5 307,665 + Dsui_0306 0.51 -0.5 307,714 - -1.1 307,803 - Dsui_0306 0.68 -1.8 307,848 - Dsui_0306 0.74 -0.5 307,936 + Dsui_0306 0.85 -1.1 308,070 + +0.5 308,120 - +0.1
Or see this region's nucleotide sequence