Strain Fitness in Dechlorosoma suillum PS around Dsui_0285

Experiment: ALP with Cisplatin 0.0007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0283 and Dsui_0284 are separated by 42 nucleotidesDsui_0284 and Dsui_0285 are separated by 295 nucleotidesDsui_0285 and Dsui_0286 overlap by 4 nucleotidesDsui_0286 and Dsui_0287 are separated by 237 nucleotidesDsui_0287 and Dsui_0288 are separated by 52 nucleotides Dsui_0283: Dsui_0283 - chaperonin GroL, at 283,284 to 284,933 _0283 Dsui_0284: Dsui_0284 - Co-chaperonin GroES, at 284,976 to 285,266 _0284 Dsui_0285: Dsui_0285 - methionine aminopeptidase, type I, at 285,562 to 286,386 _0285 Dsui_0286: Dsui_0286 - Protein of unknown function (DUF3423), at 286,383 to 286,613 _0286 Dsui_0287: Dsui_0287 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 286,851 to 287,327 _0287 Dsui_0288: Dsui_0288 - hypothetical protein, at 287,380 to 287,595 _0288 Position (kb) 285 286 287Strain fitness (log2 ratio) -3 -2 -1 0 1at 284.974 kb on - strandat 284.981 kb on - strandat 284.981 kb on - strandat 285.000 kb on - strandat 285.306 kb on - strandat 285.343 kb on - strandat 285.442 kb on - strandat 285.442 kb on - strandat 285.537 kb on - strandat 285.560 kb on + strandat 285.563 kb on - strandat 285.568 kb on - strandat 285.568 kb on - strandat 285.574 kb on - strandat 285.585 kb on - strandat 285.610 kb on + strandat 285.658 kb on + strand, within Dsui_0285at 285.666 kb on - strand, within Dsui_0285at 285.697 kb on + strand, within Dsui_0285at 285.703 kb on + strandat 285.711 kb on - strand, within Dsui_0285at 285.773 kb on - strand, within Dsui_0285at 285.797 kb on - strand, within Dsui_0285at 285.824 kb on - strand, within Dsui_0285at 285.852 kb on - strand, within Dsui_0285at 285.852 kb on - strand, within Dsui_0285at 285.887 kb on + strandat 285.895 kb on - strand, within Dsui_0285at 285.913 kb on + strandat 285.983 kb on + strand, within Dsui_0285at 286.042 kb on + strandat 286.154 kb on - strand, within Dsui_0285at 286.172 kb on + strandat 286.178 kb on + strand, within Dsui_0285at 286.179 kb on - strand, within Dsui_0285at 286.180 kb on - strand, within Dsui_0285at 286.180 kb on - strand, within Dsui_0285at 286.180 kb on - strand, within Dsui_0285at 286.180 kb on - strand, within Dsui_0285at 286.180 kb on - strand, within Dsui_0285at 286.186 kb on - strand, within Dsui_0285at 286.190 kb on - strand, within Dsui_0285at 286.302 kb on + strandat 286.341 kb on - strandat 286.425 kb on + strandat 286.425 kb on + strandat 286.433 kb on - strand, within Dsui_0286at 286.471 kb on + strandat 286.471 kb on + strand, within Dsui_0286at 286.479 kb on - strand, within Dsui_0286at 286.479 kb on - strand, within Dsui_0286at 286.479 kb on - strand, within Dsui_0286at 286.479 kb on - strand, within Dsui_0286at 286.484 kb on - strand, within Dsui_0286at 286.489 kb on - strand, within Dsui_0286at 286.489 kb on - strand, within Dsui_0286at 286.548 kb on + strand, within Dsui_0286at 286.548 kb on + strand, within Dsui_0286at 286.556 kb on - strand, within Dsui_0286at 286.608 kb on + strandat 286.616 kb on - strandat 286.616 kb on - strandat 286.618 kb on + strandat 286.669 kb on + strandat 286.674 kb on + strandat 286.674 kb on + strandat 286.674 kb on + strandat 286.674 kb on + strandat 286.682 kb on - strandat 286.682 kb on - strandat 286.682 kb on - strandat 286.744 kb on - strandat 286.788 kb on + strandat 286.791 kb on - strandat 287.172 kb on + strand, within Dsui_0287at 287.194 kb on - strand, within Dsui_0287at 287.303 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml
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284,974 - +0.2
284,981 - -0.9
284,981 - -0.3
285,000 - +0.3
285,306 - -0.7
285,343 - -0.7
285,442 - -2.2
285,442 - +0.6
285,537 - -1.0
285,560 + +0.6
285,563 - -1.0
285,568 - -0.4
285,568 - -0.4
285,574 - -0.4
285,585 - -1.4
285,610 + +0.6
285,658 + Dsui_0285 0.12 -0.4
285,666 - Dsui_0285 0.13 -1.0
285,697 + Dsui_0285 0.16 -1.0
285,703 + +0.6
285,711 - Dsui_0285 0.18 +0.0
285,773 - Dsui_0285 0.26 +0.6
285,797 - Dsui_0285 0.28 -0.4
285,824 - Dsui_0285 0.32 -0.4
285,852 - Dsui_0285 0.35 +0.6
285,852 - Dsui_0285 0.35 -1.4
285,887 + +0.6
285,895 - Dsui_0285 0.40 -0.4
285,913 + +0.6
285,983 + Dsui_0285 0.51 -2.0
286,042 + +0.6
286,154 - Dsui_0285 0.72 -1.3
286,172 + +0.6
286,178 + Dsui_0285 0.75 -2.0
286,179 - Dsui_0285 0.75 +0.6
286,180 - Dsui_0285 0.75 +0.6
286,180 - Dsui_0285 0.75 +0.6
286,180 - Dsui_0285 0.75 -0.4
286,180 - Dsui_0285 0.75 +0.6
286,180 - Dsui_0285 0.75 -2.9
286,186 - Dsui_0285 0.76 -2.0
286,190 - Dsui_0285 0.76 -1.8
286,302 + -0.4
286,341 - +0.3
286,425 + -0.4
286,425 + +0.6
286,433 - Dsui_0286 0.22 +0.4
286,471 + -1.0
286,471 + Dsui_0286 0.38 -1.4
286,479 - Dsui_0286 0.42 -0.2
286,479 - Dsui_0286 0.42 -0.1
286,479 - Dsui_0286 0.42 -1.1
286,479 - Dsui_0286 0.42 -0.1
286,484 - Dsui_0286 0.44 -0.4
286,489 - Dsui_0286 0.46 -0.2
286,489 - Dsui_0286 0.46 +0.0
286,548 + Dsui_0286 0.71 -1.0
286,548 + Dsui_0286 0.71 +0.6
286,556 - Dsui_0286 0.75 -0.0
286,608 + +0.6
286,616 - -2.0
286,616 - -0.4
286,618 + +0.6
286,669 + -0.4
286,674 + -1.8
286,674 + -0.4
286,674 + -1.0
286,674 + +0.6
286,682 - +0.6
286,682 - -1.0
286,682 - +0.6
286,744 - -1.0
286,788 + -0.9
286,791 - +0.2
287,172 + Dsui_0287 0.67 +0.0
287,194 - Dsui_0287 0.72 -2.0
287,303 + +0.1

Or see this region's nucleotide sequence