Experiment: ALP with Cisplatin 0.0007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0041 and Dsui_0042 are separated by 134 nucleotides Dsui_0042 and Dsui_0043 are separated by 135 nucleotides Dsui_0043 and Dsui_0044 are separated by 25 nucleotides
Dsui_0041: Dsui_0041 - hypothetical protein, at 38,068 to 39,075
_0041
Dsui_0042: Dsui_0042 - Protein of unknown function (DUF2892), at 39,210 to 39,401
_0042
Dsui_0043: Dsui_0043 - cAMP-binding protein, at 39,537 to 40,205
_0043
Dsui_0044: Dsui_0044 - exodeoxyribonuclease III, at 40,231 to 41,004
_0044
Position (kb) 39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 38.229 kb on - strand at 38.347 kb on - strand, within Dsui_0041 at 38.452 kb on - strand at 38.459 kb on - strand at 38.466 kb on + strand, within Dsui_0041 at 38.510 kb on + strand, within Dsui_0041 at 38.518 kb on - strand, within Dsui_0041 at 38.640 kb on - strand, within Dsui_0041 at 38.686 kb on + strand, within Dsui_0041 at 38.692 kb on + strand, within Dsui_0041 at 38.819 kb on + strand, within Dsui_0041 at 38.871 kb on - strand at 38.895 kb on + strand, within Dsui_0041 at 38.895 kb on + strand, within Dsui_0041 at 38.903 kb on - strand, within Dsui_0041 at 38.950 kb on + strand, within Dsui_0041 at 39.023 kb on - strand at 39.026 kb on + strand at 39.198 kb on + strand at 39.208 kb on + strand at 39.249 kb on + strand at 39.321 kb on + strand, within Dsui_0042 at 39.352 kb on - strand, within Dsui_0042 at 39.438 kb on - strand at 39.463 kb on - strand at 39.628 kb on + strand at 39.639 kb on - strand, within Dsui_0043 at 39.666 kb on + strand at 39.712 kb on - strand, within Dsui_0043 at 39.914 kb on + strand, within Dsui_0043 at 39.933 kb on + strand, within Dsui_0043 at 39.933 kb on + strand, within Dsui_0043 at 39.941 kb on - strand, within Dsui_0043 at 39.982 kb on + strand at 39.990 kb on - strand, within Dsui_0043 at 40.025 kb on + strand at 40.044 kb on - strand, within Dsui_0043 at 40.093 kb on - strand, within Dsui_0043 at 40.120 kb on + strand, within Dsui_0043 at 40.207 kb on - strand at 40.222 kb on + strand at 40.259 kb on + strand at 40.368 kb on + strand, within Dsui_0044 at 40.376 kb on - strand, within Dsui_0044
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0007 mg/ml remove 38,229 - +0.6 38,347 - Dsui_0041 0.28 -1.8 38,452 - -0.4 38,459 - +0.6 38,466 + Dsui_0041 0.39 -0.2 38,510 + Dsui_0041 0.44 -1.2 38,518 - Dsui_0041 0.45 -0.4 38,640 - Dsui_0041 0.57 +0.6 38,686 + Dsui_0041 0.61 -0.2 38,692 + Dsui_0041 0.62 +0.1 38,819 + Dsui_0041 0.75 -0.8 38,871 - +0.6 38,895 + Dsui_0041 0.82 -1.0 38,895 + Dsui_0041 0.82 -0.1 38,903 - Dsui_0041 0.83 -1.0 38,950 + Dsui_0041 0.88 -0.6 39,023 - -2.0 39,026 + -0.9 39,198 + -1.4 39,208 + -1.8 39,249 + +0.6 39,321 + Dsui_0042 0.58 -1.8 39,352 - Dsui_0042 0.74 -0.4 39,438 - -0.6 39,463 - -0.4 39,628 + +0.6 39,639 - Dsui_0043 0.15 -0.3 39,666 + +0.6 39,712 - Dsui_0043 0.26 -0.5 39,914 + Dsui_0043 0.56 -1.4 39,933 + Dsui_0043 0.59 +0.6 39,933 + Dsui_0043 0.59 -0.4 39,941 - Dsui_0043 0.60 -0.6 39,982 + +0.6 39,990 - Dsui_0043 0.68 +0.1 40,025 + +0.6 40,044 - Dsui_0043 0.76 -0.3 40,093 - Dsui_0043 0.83 -0.2 40,120 + Dsui_0043 0.87 -0.4 40,207 - -0.3 40,222 + -1.8 40,259 + -1.0 40,368 + Dsui_0044 0.18 +0.6 40,376 - Dsui_0044 0.19 -2.8
Or see this region's nucleotide sequence