Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23400

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23395 and BWI76_RS23400 are separated by 71 nucleotidesBWI76_RS23400 and BWI76_RS23405 are separated by 322 nucleotides BWI76_RS23395: BWI76_RS23395 - sugar ABC transporter substrate-binding protein, at 4,878,240 to 4,879,526 _RS23395 BWI76_RS23400: BWI76_RS23400 - oligogalacturonide lyase, at 4,879,598 to 4,880,725 _RS23400 BWI76_RS23405: BWI76_RS23405 - porin, at 4,881,048 to 4,882,391 _RS23405 Position (kb) 4879 4880 4881Strain fitness (log2 ratio) -2 -1 0 1 2at 4878.637 kb on - strand, within BWI76_RS23395at 4878.955 kb on - strand, within BWI76_RS23395at 4878.959 kb on + strand, within BWI76_RS23395at 4878.969 kb on - strand, within BWI76_RS23395at 4879.015 kb on - strand, within BWI76_RS23395at 4879.015 kb on - strand, within BWI76_RS23395at 4879.100 kb on - strand, within BWI76_RS23395at 4879.102 kb on + strand, within BWI76_RS23395at 4879.123 kb on + strand, within BWI76_RS23395at 4879.287 kb on + strand, within BWI76_RS23395at 4879.428 kb on + strandat 4879.434 kb on - strandat 4879.583 kb on + strandat 4879.647 kb on - strandat 4879.816 kb on + strand, within BWI76_RS23400at 4879.916 kb on + strand, within BWI76_RS23400at 4879.938 kb on - strand, within BWI76_RS23400at 4879.963 kb on + strand, within BWI76_RS23400at 4880.063 kb on - strand, within BWI76_RS23400at 4880.420 kb on - strand, within BWI76_RS23400at 4880.573 kb on + strand, within BWI76_RS23400at 4880.715 kb on - strandat 4880.748 kb on + strandat 4880.756 kb on - strandat 4880.756 kb on - strandat 4880.975 kb on + strandat 4881.010 kb on - strandat 4881.021 kb on - strandat 4881.203 kb on - strand, within BWI76_RS23405at 4881.205 kb on + strand, within BWI76_RS23405at 4881.247 kb on + strand, within BWI76_RS23405at 4881.251 kb on - strand, within BWI76_RS23405at 4881.282 kb on - strand, within BWI76_RS23405at 4881.312 kb on + strand, within BWI76_RS23405at 4881.315 kb on - strand, within BWI76_RS23405at 4881.388 kb on + strand, within BWI76_RS23405at 4881.673 kb on + strand, within BWI76_RS23405at 4881.681 kb on - strand, within BWI76_RS23405at 4881.688 kb on - strand, within BWI76_RS23405at 4881.688 kb on - strand, within BWI76_RS23405at 4881.711 kb on + strand, within BWI76_RS23405at 4881.712 kb on + strand, within BWI76_RS23405

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,878,637 - BWI76_RS23395 0.31 +1.9
4,878,955 - BWI76_RS23395 0.56 -0.3
4,878,959 + BWI76_RS23395 0.56 -0.2
4,878,969 - BWI76_RS23395 0.57 -0.1
4,879,015 - BWI76_RS23395 0.60 +0.0
4,879,015 - BWI76_RS23395 0.60 -1.1
4,879,100 - BWI76_RS23395 0.67 -0.8
4,879,102 + BWI76_RS23395 0.67 +2.0
4,879,123 + BWI76_RS23395 0.69 -0.4
4,879,287 + BWI76_RS23395 0.81 -0.0
4,879,428 + +0.3
4,879,434 - +0.2
4,879,583 + -0.1
4,879,647 - +0.0
4,879,816 + BWI76_RS23400 0.19 +0.1
4,879,916 + BWI76_RS23400 0.28 +2.0
4,879,938 - BWI76_RS23400 0.30 +0.1
4,879,963 + BWI76_RS23400 0.32 +0.2
4,880,063 - BWI76_RS23400 0.41 +0.6
4,880,420 - BWI76_RS23400 0.73 -0.3
4,880,573 + BWI76_RS23400 0.86 -0.4
4,880,715 - -0.1
4,880,748 + +0.5
4,880,756 - +0.5
4,880,756 - +0.2
4,880,975 + +0.3
4,881,010 - +1.1
4,881,021 - +1.7
4,881,203 - BWI76_RS23405 0.12 -0.8
4,881,205 + BWI76_RS23405 0.12 +0.7
4,881,247 + BWI76_RS23405 0.15 -0.2
4,881,251 - BWI76_RS23405 0.15 -0.4
4,881,282 - BWI76_RS23405 0.17 +0.1
4,881,312 + BWI76_RS23405 0.20 +0.0
4,881,315 - BWI76_RS23405 0.20 +0.6
4,881,388 + BWI76_RS23405 0.25 +0.3
4,881,673 + BWI76_RS23405 0.47 +0.9
4,881,681 - BWI76_RS23405 0.47 -0.4
4,881,688 - BWI76_RS23405 0.48 +1.5
4,881,688 - BWI76_RS23405 0.48 -1.8
4,881,711 + BWI76_RS23405 0.49 +0.2
4,881,712 + BWI76_RS23405 0.49 +0.6

Or see this region's nucleotide sequence