Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18075

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18065 and BWI76_RS18070 are separated by 78 nucleotidesBWI76_RS18070 and BWI76_RS18075 are separated by 6 nucleotidesBWI76_RS18075 and BWI76_RS18080 are separated by 133 nucleotidesBWI76_RS18080 and BWI76_RS18085 are separated by 144 nucleotides BWI76_RS18065: BWI76_RS18065 - DNA polymerase III subunit theta, at 3,753,460 to 3,753,690 _RS18065 BWI76_RS18070: BWI76_RS18070 - DNA polymerase III subunit epsilon, at 3,753,769 to 3,754,428 _RS18070 BWI76_RS18075: BWI76_RS18075 - oligopeptidase B, at 3,754,435 to 3,756,495 _RS18075 BWI76_RS18080: BWI76_RS18080 - protein YebE, at 3,756,629 to 3,757,309 _RS18080 BWI76_RS18085: BWI76_RS18085 - hypothetical protein, at 3,757,454 to 3,757,816 _RS18085 Position (kb) 3754 3755 3756 3757Strain fitness (log2 ratio) -2 -1 0 1 2at 3753.536 kb on + strand, within BWI76_RS18065at 3753.590 kb on + strandat 3754.286 kb on + strand, within BWI76_RS18070at 3754.287 kb on - strand, within BWI76_RS18070at 3754.293 kb on - strand, within BWI76_RS18070at 3754.385 kb on + strandat 3754.385 kb on + strandat 3754.447 kb on - strandat 3754.661 kb on - strand, within BWI76_RS18075at 3754.942 kb on - strand, within BWI76_RS18075at 3755.332 kb on - strand, within BWI76_RS18075at 3755.332 kb on - strand, within BWI76_RS18075at 3755.529 kb on + strand, within BWI76_RS18075at 3755.856 kb on + strand, within BWI76_RS18075at 3756.276 kb on - strand, within BWI76_RS18075at 3756.525 kb on - strandat 3756.544 kb on + strandat 3756.562 kb on - strandat 3756.570 kb on - strandat 3756.626 kb on + strandat 3756.824 kb on + strand, within BWI76_RS18080at 3757.080 kb on + strand, within BWI76_RS18080

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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3,753,536 + BWI76_RS18065 0.33 -0.6
3,753,590 + +2.5
3,754,286 + BWI76_RS18070 0.78 +1.0
3,754,287 - BWI76_RS18070 0.78 -0.1
3,754,293 - BWI76_RS18070 0.79 -0.0
3,754,385 + +0.2
3,754,385 + -0.7
3,754,447 - +0.4
3,754,661 - BWI76_RS18075 0.11 -0.4
3,754,942 - BWI76_RS18075 0.25 -0.5
3,755,332 - BWI76_RS18075 0.44 -0.5
3,755,332 - BWI76_RS18075 0.44 -1.3
3,755,529 + BWI76_RS18075 0.53 -1.8
3,755,856 + BWI76_RS18075 0.69 +0.4
3,756,276 - BWI76_RS18075 0.89 -0.7
3,756,525 - -0.0
3,756,544 + +0.2
3,756,562 - +0.0
3,756,570 - -0.2
3,756,626 + -0.1
3,756,824 + BWI76_RS18080 0.29 -0.5
3,757,080 + BWI76_RS18080 0.66 +0.0

Or see this region's nucleotide sequence