Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08515

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08500 and BWI76_RS08505 are separated by 15 nucleotidesBWI76_RS08505 and BWI76_RS08510 overlap by 1 nucleotidesBWI76_RS08510 and BWI76_RS08515 are separated by 149 nucleotidesBWI76_RS08515 and BWI76_RS08520 are separated by 5 nucleotidesBWI76_RS08520 and BWI76_RS08525 are separated by 3 nucleotides BWI76_RS08500: BWI76_RS08500 - cytochrome d ubiquinol oxidase subunit 2, at 1,801,679 to 1,802,818 _RS08500 BWI76_RS08505: BWI76_RS08505 - cytochrome bd-I oxidase subunit CydX, at 1,802,834 to 1,802,947 _RS08505 BWI76_RS08510: BWI76_RS08510 - cyd operon protein YbgE, at 1,802,947 to 1,803,237 _RS08510 BWI76_RS08515: BWI76_RS08515 - acyl-CoA thioesterase YbgC, at 1,803,387 to 1,803,791 _RS08515 BWI76_RS08520: BWI76_RS08520 - colicin transporter TolQ, at 1,803,797 to 1,804,480 _RS08520 BWI76_RS08525: BWI76_RS08525 - colicin transporter, at 1,804,484 to 1,804,912 _RS08525 Position (kb) 1803 1804Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1802.639 kb on + strand, within BWI76_RS08500at 1802.734 kb on + strandat 1802.812 kb on + strandat 1802.965 kb on + strandat 1803.068 kb on + strand, within BWI76_RS08510at 1803.086 kb on - strand, within BWI76_RS08510at 1803.105 kb on + strand, within BWI76_RS08510at 1803.125 kb on + strand, within BWI76_RS08510at 1803.447 kb on + strand, within BWI76_RS08515at 1803.764 kb on + strandat 1803.812 kb on - strandat 1803.823 kb on + strandat 1804.000 kb on - strand, within BWI76_RS08520at 1804.358 kb on + strand, within BWI76_RS08520at 1804.368 kb on + strand, within BWI76_RS08520at 1804.421 kb on - strandat 1804.433 kb on + strandat 1804.486 kb on + strandat 1804.491 kb on + strandat 1804.546 kb on + strand, within BWI76_RS08525at 1804.697 kb on + strand, within BWI76_RS08525at 1804.753 kb on + strand, within BWI76_RS08525

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,802,639 + BWI76_RS08500 0.84 -0.4
1,802,734 + -0.8
1,802,812 + -0.7
1,802,965 + -0.3
1,803,068 + BWI76_RS08510 0.42 -0.9
1,803,086 - BWI76_RS08510 0.48 -1.0
1,803,105 + BWI76_RS08510 0.54 -0.2
1,803,125 + BWI76_RS08510 0.61 +1.1
1,803,447 + BWI76_RS08515 0.15 -1.1
1,803,764 + +0.2
1,803,812 - -3.8
1,803,823 + -5.2
1,804,000 - BWI76_RS08520 0.30 -4.2
1,804,358 + BWI76_RS08520 0.82 -4.1
1,804,368 + BWI76_RS08520 0.83 -2.5
1,804,421 - +0.5
1,804,433 + -1.9
1,804,486 + -4.9
1,804,491 + -5.2
1,804,546 + BWI76_RS08525 0.14 -4.5
1,804,697 + BWI76_RS08525 0.50 -1.3
1,804,753 + BWI76_RS08525 0.63 -2.1

Or see this region's nucleotide sequence