Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_735 and Pf1N1B4_736 overlap by 14 nucleotides Pf1N1B4_736 and Pf1N1B4_737 overlap by 4 nucleotides Pf1N1B4_737 and Pf1N1B4_738 overlap by 8 nucleotides Pf1N1B4_738 and Pf1N1B4_739 are separated by 25 nucleotides
Pf1N1B4_735 - Electron transport complex protein RnfB, at 838,162 to 839,169
_735
Pf1N1B4_736 - Electron transport complex protein RnfD, at 839,156 to 840,148
_736
Pf1N1B4_737 - Electron transport complex protein RnfG, at 840,145 to 840,756
_737
Pf1N1B4_738 - Electron transport complex protein RnfE, at 840,749 to 841,339
_738
Pf1N1B4_739 - Endonuclease III (EC 4.2.99.18), at 841,365 to 842,003
_739
Position (kb) 840
841 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 839.155 kb on + strand at 839.156 kb on - strand at 839.156 kb on - strand at 839.208 kb on + strand at 839.253 kb on - strand at 839.322 kb on + strand, within Pf1N1B4_736 at 839.322 kb on + strand, within Pf1N1B4_736 at 839.411 kb on + strand, within Pf1N1B4_736 at 839.474 kb on + strand, within Pf1N1B4_736 at 839.474 kb on + strand, within Pf1N1B4_736 at 839.474 kb on + strand, within Pf1N1B4_736 at 839.474 kb on + strand, within Pf1N1B4_736 at 839.875 kb on + strand, within Pf1N1B4_736 at 839.994 kb on + strand, within Pf1N1B4_736 at 840.026 kb on + strand, within Pf1N1B4_736 at 840.026 kb on + strand, within Pf1N1B4_736 at 840.026 kb on + strand, within Pf1N1B4_736 at 840.027 kb on - strand, within Pf1N1B4_736 at 840.208 kb on + strand, within Pf1N1B4_737 at 840.208 kb on + strand, within Pf1N1B4_737 at 840.208 kb on + strand, within Pf1N1B4_737 at 840.208 kb on + strand, within Pf1N1B4_737 at 840.209 kb on - strand, within Pf1N1B4_737 at 840.301 kb on + strand, within Pf1N1B4_737 at 840.302 kb on - strand, within Pf1N1B4_737 at 840.302 kb on - strand, within Pf1N1B4_737 at 840.377 kb on - strand, within Pf1N1B4_737 at 840.377 kb on - strand, within Pf1N1B4_737 at 840.485 kb on + strand, within Pf1N1B4_737 at 840.485 kb on + strand, within Pf1N1B4_737 at 840.485 kb on + strand, within Pf1N1B4_737 at 840.485 kb on + strand, within Pf1N1B4_737 at 840.486 kb on - strand, within Pf1N1B4_737 at 840.555 kb on + strand, within Pf1N1B4_737 at 840.555 kb on + strand, within Pf1N1B4_737 at 840.556 kb on - strand, within Pf1N1B4_737 at 840.556 kb on - strand, within Pf1N1B4_737 at 840.706 kb on + strand at 840.706 kb on + strand at 840.707 kb on - strand at 840.707 kb on - strand at 840.754 kb on + strand at 840.754 kb on + strand at 840.754 kb on + strand at 840.754 kb on + strand at 840.754 kb on + strand at 840.754 kb on + strand at 840.755 kb on - strand at 840.755 kb on - strand at 840.755 kb on - strand at 840.755 kb on - strand at 840.755 kb on - strand at 840.755 kb on - strand at 840.755 kb on - strand at 840.755 kb on - strand at 840.769 kb on - strand at 840.788 kb on - strand at 840.866 kb on + strand, within Pf1N1B4_738 at 840.867 kb on - strand, within Pf1N1B4_738 at 840.867 kb on - strand, within Pf1N1B4_738 at 840.867 kb on - strand, within Pf1N1B4_738 at 840.879 kb on + strand, within Pf1N1B4_738 at 840.879 kb on + strand, within Pf1N1B4_738 at 840.879 kb on + strand at 840.879 kb on + strand at 840.880 kb on - strand, within Pf1N1B4_738 at 840.880 kb on - strand, within Pf1N1B4_738 at 840.933 kb on + strand, within Pf1N1B4_738 at 841.013 kb on + strand, within Pf1N1B4_738 at 841.273 kb on + strand, within Pf1N1B4_738 at 841.274 kb on - strand, within Pf1N1B4_738 at 841.281 kb on + strand at 841.288 kb on - strand at 841.440 kb on + strand, within Pf1N1B4_739 at 841.441 kb on - strand, within Pf1N1B4_739 at 841.441 kb on - strand, within Pf1N1B4_739 at 841.542 kb on - strand, within Pf1N1B4_739 at 841.587 kb on + strand, within Pf1N1B4_739 at 841.587 kb on + strand, within Pf1N1B4_739 at 841.588 kb on - strand, within Pf1N1B4_739 at 841.648 kb on + strand, within Pf1N1B4_739 at 841.649 kb on - strand, within Pf1N1B4_739 at 841.675 kb on + strand, within Pf1N1B4_739
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 839,155 + -0.3 839,156 - +2.1 839,156 - -0.9 839,208 + +0.5 839,253 - +0.7 839,322 + Pf1N1B4_736 0.17 -0.0 839,322 + Pf1N1B4_736 0.17 -0.5 839,411 + Pf1N1B4_736 0.26 +2.1 839,474 + Pf1N1B4_736 0.32 +1.2 839,474 + Pf1N1B4_736 0.32 +1.4 839,474 + Pf1N1B4_736 0.32 +0.9 839,474 + Pf1N1B4_736 0.32 -0.9 839,875 + Pf1N1B4_736 0.72 +0.4 839,994 + Pf1N1B4_736 0.84 +0.9 840,026 + Pf1N1B4_736 0.88 -2.9 840,026 + Pf1N1B4_736 0.88 +0.1 840,026 + Pf1N1B4_736 0.88 +1.9 840,027 - Pf1N1B4_736 0.88 -0.2 840,208 + Pf1N1B4_737 0.10 -0.9 840,208 + Pf1N1B4_737 0.10 +0.7 840,208 + Pf1N1B4_737 0.10 +0.9 840,208 + Pf1N1B4_737 0.10 +0.3 840,209 - Pf1N1B4_737 0.10 +0.3 840,301 + Pf1N1B4_737 0.25 -0.9 840,302 - Pf1N1B4_737 0.26 -0.9 840,302 - Pf1N1B4_737 0.26 +1.1 840,377 - Pf1N1B4_737 0.38 -0.3 840,377 - Pf1N1B4_737 0.38 +1.3 840,485 + Pf1N1B4_737 0.56 +0.9 840,485 + Pf1N1B4_737 0.56 +1.7 840,485 + Pf1N1B4_737 0.56 +1.9 840,485 + Pf1N1B4_737 0.56 +1.1 840,486 - Pf1N1B4_737 0.56 -0.9 840,555 + Pf1N1B4_737 0.67 +1.0 840,555 + Pf1N1B4_737 0.67 +0.7 840,556 - Pf1N1B4_737 0.67 -1.9 840,556 - Pf1N1B4_737 0.67 -0.9 840,706 + +0.1 840,706 + +0.3 840,707 - +0.3 840,707 - -0.9 840,754 + -1.9 840,754 + -0.9 840,754 + +0.1 840,754 + +1.4 840,754 + +0.9 840,754 + -0.3 840,755 - -0.9 840,755 - -1.1 840,755 - +0.1 840,755 - +1.9 840,755 - -3.2 840,755 - +0.7 840,755 - -0.9 840,755 - -0.6 840,769 - -0.1 840,788 - +1.1 840,866 + Pf1N1B4_738 0.20 +0.9 840,867 - Pf1N1B4_738 0.20 +0.1 840,867 - Pf1N1B4_738 0.20 +0.1 840,867 - Pf1N1B4_738 0.20 -0.0 840,879 + Pf1N1B4_738 0.22 +0.7 840,879 + Pf1N1B4_738 0.22 -1.5 840,879 + +1.7 840,879 + +1.9 840,880 - Pf1N1B4_738 0.22 +0.4 840,880 - Pf1N1B4_738 0.22 +0.8 840,933 + Pf1N1B4_738 0.31 +0.4 841,013 + Pf1N1B4_738 0.45 +0.7 841,273 + Pf1N1B4_738 0.89 +0.1 841,274 - Pf1N1B4_738 0.89 +0.1 841,281 + +1.4 841,288 - +1.4 841,440 + Pf1N1B4_739 0.12 +0.7 841,441 - Pf1N1B4_739 0.12 +0.7 841,441 - Pf1N1B4_739 0.12 -0.9 841,542 - Pf1N1B4_739 0.28 +0.1 841,587 + Pf1N1B4_739 0.35 -0.3 841,587 + Pf1N1B4_739 0.35 -0.1 841,588 - Pf1N1B4_739 0.35 -0.3 841,648 + Pf1N1B4_739 0.44 -0.9 841,649 - Pf1N1B4_739 0.44 -0.9 841,675 + Pf1N1B4_739 0.49 +1.4
Or see this region's nucleotide sequence