Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_482

Experiment: nitrate (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_480 and Pf1N1B4_481 are separated by 100 nucleotidesPf1N1B4_481 and Pf1N1B4_482 are separated by 196 nucleotidesPf1N1B4_482 and Pf1N1B4_483 are separated by 135 nucleotidesPf1N1B4_483 and Pf1N1B4_484 are separated by 92 nucleotides Pf1N1B4_480 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 570,930 to 573,119 _480 Pf1N1B4_481 - FIG00956241: hypothetical protein, at 573,220 to 573,627 _481 Pf1N1B4_482 - Transcriptional regulator, LysR family, at 573,824 to 574,822 _482 Pf1N1B4_483 - Metal-dependent hydrolase related to alanyl-tRNA synthetase, at 574,958 to 575,539 _483 Pf1N1B4_484 - Hydrogenase maturation factor, at 575,632 to 576,402 _484 Position (kb) 573 574 575Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 573.095 kb on - strandat 573.153 kb on + strandat 573.153 kb on + strandat 573.153 kb on + strandat 573.154 kb on - strandat 573.154 kb on - strandat 573.156 kb on + strandat 573.156 kb on + strandat 573.156 kb on + strandat 573.156 kb on + strandat 573.156 kb on + strandat 573.156 kb on + strandat 573.157 kb on - strandat 573.157 kb on - strandat 573.157 kb on - strandat 573.157 kb on - strandat 573.157 kb on - strandat 573.157 kb on - strandat 573.157 kb on - strandat 573.181 kb on + strandat 573.181 kb on + strandat 573.181 kb on + strandat 573.182 kb on - strandat 573.182 kb on - strandat 573.183 kb on + strandat 573.183 kb on + strandat 573.183 kb on + strandat 573.184 kb on - strandat 573.184 kb on - strandat 573.184 kb on - strandat 573.184 kb on - strandat 573.184 kb on - strandat 573.214 kb on + strandat 573.214 kb on + strandat 573.214 kb on + strandat 573.214 kb on + strandat 573.215 kb on - strandat 573.215 kb on - strandat 573.215 kb on - strandat 573.215 kb on - strandat 573.284 kb on + strand, within Pf1N1B4_481at 573.285 kb on - strand, within Pf1N1B4_481at 573.285 kb on - strand, within Pf1N1B4_481at 573.285 kb on - strand, within Pf1N1B4_481at 573.386 kb on - strand, within Pf1N1B4_481at 573.466 kb on + strand, within Pf1N1B4_481at 573.466 kb on + strand, within Pf1N1B4_481at 573.466 kb on + strandat 573.490 kb on + strand, within Pf1N1B4_481at 573.490 kb on + strand, within Pf1N1B4_481at 573.490 kb on + strand, within Pf1N1B4_481at 573.490 kb on + strand, within Pf1N1B4_481at 573.490 kb on + strand, within Pf1N1B4_481at 573.490 kb on + strand, within Pf1N1B4_481at 573.490 kb on + strand, within Pf1N1B4_481at 573.490 kb on + strand, within Pf1N1B4_481at 573.491 kb on - strandat 573.491 kb on - strand, within Pf1N1B4_481at 573.491 kb on - strand, within Pf1N1B4_481at 573.491 kb on - strand, within Pf1N1B4_481at 573.491 kb on - strand, within Pf1N1B4_481at 573.491 kb on - strand, within Pf1N1B4_481at 573.491 kb on - strand, within Pf1N1B4_481at 573.517 kb on + strand, within Pf1N1B4_481at 573.593 kb on + strandat 573.662 kb on + strandat 573.663 kb on - strandat 573.855 kb on + strandat 573.855 kb on + strandat 573.855 kb on + strandat 573.856 kb on - strandat 573.856 kb on - strandat 573.937 kb on - strand, within Pf1N1B4_482at 574.083 kb on + strand, within Pf1N1B4_482at 574.233 kb on + strand, within Pf1N1B4_482at 574.233 kb on + strand, within Pf1N1B4_482at 574.234 kb on - strand, within Pf1N1B4_482at 574.234 kb on - strand, within Pf1N1B4_482at 574.237 kb on + strand, within Pf1N1B4_482at 574.237 kb on + strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.238 kb on - strand, within Pf1N1B4_482at 574.313 kb on + strand, within Pf1N1B4_482at 574.313 kb on + strand, within Pf1N1B4_482at 574.314 kb on - strand, within Pf1N1B4_482at 574.314 kb on - strand, within Pf1N1B4_482at 574.314 kb on - strand, within Pf1N1B4_482at 574.727 kb on + strandat 574.727 kb on + strandat 574.728 kb on - strandat 574.728 kb on - strandat 574.728 kb on - strandat 574.882 kb on - strandat 574.888 kb on - strandat 575.451 kb on + strand, within Pf1N1B4_483at 575.451 kb on + strand, within Pf1N1B4_483at 575.451 kb on + strand, within Pf1N1B4_483at 575.451 kb on + strand, within Pf1N1B4_483at 575.452 kb on - strand, within Pf1N1B4_483at 575.526 kb on - strandat 575.526 kb on - strandat 575.526 kb on - strandat 575.526 kb on - strandat 575.615 kb on + strandat 575.615 kb on + strandat 575.615 kb on + strandat 575.625 kb on + strandat 575.625 kb on + strandat 575.625 kb on + strandat 575.626 kb on - strandat 575.669 kb on + strandat 575.669 kb on + strandat 575.669 kb on + strandat 575.670 kb on - strandat 575.779 kb on + strand, within Pf1N1B4_484at 575.779 kb on + strand, within Pf1N1B4_484at 575.779 kb on + strand, within Pf1N1B4_484at 575.779 kb on + strand, within Pf1N1B4_484at 575.779 kb on + strand, within Pf1N1B4_484at 575.780 kb on - strand, within Pf1N1B4_484at 575.780 kb on - strand, within Pf1N1B4_484at 575.780 kb on - strand, within Pf1N1B4_484at 575.805 kb on + strand, within Pf1N1B4_484at 575.805 kb on + strand, within Pf1N1B4_484at 575.821 kb on + strand, within Pf1N1B4_484at 575.821 kb on + strand, within Pf1N1B4_484at 575.821 kb on + strand, within Pf1N1B4_484at 575.822 kb on - strand, within Pf1N1B4_484

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
remove
573,095 - -1.0
573,153 + +0.1
573,153 + -1.0
573,153 + -1.0
573,154 - +0.3
573,154 - -2.6
573,156 + +0.3
573,156 + +0.0
573,156 + +0.6
573,156 + +1.0
573,156 + +1.9
573,156 + +1.3
573,157 - +1.6
573,157 - +0.0
573,157 - +2.0
573,157 - -1.6
573,157 - -1.0
573,157 - -0.6
573,157 - +0.2
573,181 + +1.6
573,181 + -0.3
573,181 + +0.0
573,182 - +0.9
573,182 - +0.8
573,183 + +0.0
573,183 + -0.6
573,183 + +1.6
573,184 - +0.0
573,184 - -1.6
573,184 - +0.0
573,184 - +0.2
573,184 - +0.6
573,214 + +0.0
573,214 + +0.6
573,214 + -1.0
573,214 + -0.7
573,215 - +1.9
573,215 - +0.0
573,215 - -0.4
573,215 - +0.5
573,284 + Pf1N1B4_481 0.16 -0.2
573,285 - Pf1N1B4_481 0.16 +0.8
573,285 - Pf1N1B4_481 0.16 +2.2
573,285 - Pf1N1B4_481 0.16 -1.0
573,386 - Pf1N1B4_481 0.41 +1.9
573,466 + Pf1N1B4_481 0.60 +1.0
573,466 + Pf1N1B4_481 0.60 +1.3
573,466 + -1.0
573,490 + Pf1N1B4_481 0.66 +1.0
573,490 + Pf1N1B4_481 0.66 +0.6
573,490 + Pf1N1B4_481 0.66 -1.0
573,490 + Pf1N1B4_481 0.66 -0.4
573,490 + Pf1N1B4_481 0.66 +1.1
573,490 + Pf1N1B4_481 0.66 -1.0
573,490 + Pf1N1B4_481 0.66 -1.0
573,490 + Pf1N1B4_481 0.66 +1.3
573,491 - +0.0
573,491 - Pf1N1B4_481 0.66 +2.6
573,491 - Pf1N1B4_481 0.66 +0.0
573,491 - Pf1N1B4_481 0.66 +0.2
573,491 - Pf1N1B4_481 0.66 +0.2
573,491 - Pf1N1B4_481 0.66 -3.3
573,491 - Pf1N1B4_481 0.66 -0.2
573,517 + Pf1N1B4_481 0.73 +0.6
573,593 + -1.0
573,662 + +0.5
573,663 - -1.0
573,855 + -1.0
573,855 + +1.3
573,855 + -1.0
573,856 - -0.2
573,856 - +0.8
573,937 - Pf1N1B4_482 0.11 +1.8
574,083 + Pf1N1B4_482 0.26 -0.7
574,233 + Pf1N1B4_482 0.41 -1.0
574,233 + Pf1N1B4_482 0.41 +1.1
574,234 - Pf1N1B4_482 0.41 +1.4
574,234 - Pf1N1B4_482 0.41 +0.6
574,237 + Pf1N1B4_482 0.41 -1.0
574,237 + Pf1N1B4_482 0.41 -0.2
574,238 - Pf1N1B4_482 0.41 +1.8
574,238 - Pf1N1B4_482 0.41 -1.0
574,238 - Pf1N1B4_482 0.41 +0.0
574,238 - Pf1N1B4_482 0.41 +1.6
574,238 - Pf1N1B4_482 0.41 -0.4
574,238 - Pf1N1B4_482 0.41 +0.6
574,238 - Pf1N1B4_482 0.41 -2.0
574,238 - Pf1N1B4_482 0.41 +0.6
574,313 + Pf1N1B4_482 0.49 +0.4
574,313 + Pf1N1B4_482 0.49 +1.5
574,314 - Pf1N1B4_482 0.49 +0.3
574,314 - Pf1N1B4_482 0.49 -1.7
574,314 - Pf1N1B4_482 0.49 +1.0
574,727 + +3.0
574,727 + -2.0
574,728 - -0.6
574,728 - -1.0
574,728 - +0.0
574,882 - +0.8
574,888 - +1.5
575,451 + Pf1N1B4_483 0.85 +2.0
575,451 + Pf1N1B4_483 0.85 +0.6
575,451 + Pf1N1B4_483 0.85 +0.0
575,451 + Pf1N1B4_483 0.85 +1.4
575,452 - Pf1N1B4_483 0.85 -2.6
575,526 - -1.0
575,526 - +0.0
575,526 - -1.0
575,526 - +1.6
575,615 + +0.0
575,615 + -1.6
575,615 + +1.0
575,625 + +0.0
575,625 + +1.0
575,625 + -0.2
575,626 - +1.0
575,669 + +1.0
575,669 + +0.6
575,669 + +0.4
575,670 - -1.0
575,779 + Pf1N1B4_484 0.19 +1.1
575,779 + Pf1N1B4_484 0.19 +0.0
575,779 + Pf1N1B4_484 0.19 +1.6
575,779 + Pf1N1B4_484 0.19 +1.6
575,779 + Pf1N1B4_484 0.19 +1.0
575,780 - Pf1N1B4_484 0.19 -0.6
575,780 - Pf1N1B4_484 0.19 +0.2
575,780 - Pf1N1B4_484 0.19 -1.6
575,805 + Pf1N1B4_484 0.22 +0.7
575,805 + Pf1N1B4_484 0.22 -0.7
575,821 + Pf1N1B4_484 0.25 +1.4
575,821 + Pf1N1B4_484 0.25 -1.0
575,821 + Pf1N1B4_484 0.25 -2.0
575,822 - Pf1N1B4_484 0.25 +0.7

Or see this region's nucleotide sequence