Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_478 and Pf1N1B4_479 are separated by 249 nucleotides Pf1N1B4_479 and Pf1N1B4_480 overlap by 20 nucleotides Pf1N1B4_480 and Pf1N1B4_481 are separated by 100 nucleotides Pf1N1B4_481 and Pf1N1B4_482 are separated by 196 nucleotides
Pf1N1B4_478 - Transglutaminase-like enzymes, putative cysteine proteases, at 569,762 to 570,421
_478
Pf1N1B4_479 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 570,671 to 570,949
_479
Pf1N1B4_480 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 570,930 to 573,119
_480
Pf1N1B4_481 - FIG00956241: hypothetical protein, at 573,220 to 573,627
_481
Pf1N1B4_482 - Transcriptional regulator, LysR family, at 573,824 to 574,822
_482
Position (kb) 570
571
572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 569.931 kb on + strand, within Pf1N1B4_478 at 569.931 kb on + strand, within Pf1N1B4_478 at 569.932 kb on - strand, within Pf1N1B4_478 at 570.045 kb on + strand, within Pf1N1B4_478 at 570.045 kb on + strand, within Pf1N1B4_478 at 570.045 kb on + strand, within Pf1N1B4_478 at 570.046 kb on - strand at 570.047 kb on + strand, within Pf1N1B4_478 at 570.047 kb on + strand, within Pf1N1B4_478 at 570.047 kb on + strand, within Pf1N1B4_478 at 570.047 kb on + strand, within Pf1N1B4_478 at 570.047 kb on + strand, within Pf1N1B4_478 at 570.047 kb on + strand, within Pf1N1B4_478 at 570.047 kb on + strand, within Pf1N1B4_478 at 570.047 kb on + strand, within Pf1N1B4_478 at 570.048 kb on - strand, within Pf1N1B4_478 at 570.048 kb on - strand, within Pf1N1B4_478 at 570.048 kb on - strand, within Pf1N1B4_478 at 570.048 kb on - strand, within Pf1N1B4_478 at 570.058 kb on - strand at 570.121 kb on + strand, within Pf1N1B4_478 at 570.121 kb on + strand, within Pf1N1B4_478 at 570.171 kb on - strand, within Pf1N1B4_478 at 570.171 kb on - strand, within Pf1N1B4_478 at 570.171 kb on - strand, within Pf1N1B4_478 at 570.204 kb on + strand, within Pf1N1B4_478 at 570.204 kb on + strand, within Pf1N1B4_478 at 570.204 kb on + strand, within Pf1N1B4_478 at 570.205 kb on - strand, within Pf1N1B4_478 at 570.205 kb on - strand, within Pf1N1B4_478 at 570.267 kb on + strand, within Pf1N1B4_478 at 570.276 kb on + strand, within Pf1N1B4_478 at 570.276 kb on + strand, within Pf1N1B4_478 at 570.277 kb on - strand, within Pf1N1B4_478 at 570.277 kb on - strand, within Pf1N1B4_478 at 570.277 kb on - strand, within Pf1N1B4_478 at 570.277 kb on - strand at 570.277 kb on - strand, within Pf1N1B4_478 at 570.277 kb on - strand, within Pf1N1B4_478 at 570.300 kb on + strand, within Pf1N1B4_478 at 570.301 kb on - strand, within Pf1N1B4_478 at 570.303 kb on + strand, within Pf1N1B4_478 at 570.303 kb on + strand, within Pf1N1B4_478 at 570.303 kb on + strand, within Pf1N1B4_478 at 570.304 kb on - strand at 570.304 kb on - strand, within Pf1N1B4_478 at 570.304 kb on - strand, within Pf1N1B4_478 at 570.411 kb on + strand at 570.412 kb on - strand at 570.412 kb on - strand at 570.412 kb on - strand at 570.412 kb on - strand at 570.550 kb on - strand at 570.577 kb on + strand at 570.577 kb on + strand at 570.577 kb on + strand at 570.577 kb on + strand at 570.577 kb on + strand at 570.577 kb on + strand at 570.577 kb on + strand at 570.577 kb on + strand at 570.578 kb on - strand at 570.612 kb on + strand at 570.612 kb on + strand at 570.612 kb on + strand at 570.612 kb on + strand at 570.613 kb on - strand at 570.625 kb on + strand at 570.625 kb on + strand at 570.625 kb on + strand at 570.670 kb on + strand at 570.670 kb on + strand at 570.670 kb on + strand at 570.671 kb on - strand at 570.671 kb on - strand at 570.671 kb on - strand at 570.671 kb on - strand at 570.713 kb on + strand, within Pf1N1B4_479 at 570.767 kb on + strand, within Pf1N1B4_479 at 570.871 kb on + strand, within Pf1N1B4_479 at 570.871 kb on + strand, within Pf1N1B4_479 at 570.899 kb on - strand, within Pf1N1B4_479 at 570.899 kb on - strand, within Pf1N1B4_479 at 570.899 kb on - strand, within Pf1N1B4_479 at 571.221 kb on + strand, within Pf1N1B4_480 at 571.354 kb on - strand, within Pf1N1B4_480 at 571.515 kb on + strand, within Pf1N1B4_480 at 571.516 kb on - strand at 571.516 kb on - strand, within Pf1N1B4_480 at 571.566 kb on + strand, within Pf1N1B4_480 at 571.566 kb on + strand, within Pf1N1B4_480 at 571.567 kb on - strand, within Pf1N1B4_480 at 571.567 kb on - strand, within Pf1N1B4_480 at 571.567 kb on - strand, within Pf1N1B4_480 at 571.583 kb on - strand, within Pf1N1B4_480 at 571.646 kb on - strand, within Pf1N1B4_480 at 571.651 kb on + strand, within Pf1N1B4_480 at 571.652 kb on - strand, within Pf1N1B4_480 at 571.652 kb on - strand, within Pf1N1B4_480 at 571.652 kb on - strand, within Pf1N1B4_480 at 571.714 kb on + strand at 571.714 kb on + strand, within Pf1N1B4_480 at 571.714 kb on + strand, within Pf1N1B4_480 at 571.714 kb on + strand, within Pf1N1B4_480 at 571.714 kb on + strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.949 kb on + strand, within Pf1N1B4_480 at 572.017 kb on + strand, within Pf1N1B4_480 at 572.037 kb on + strand, within Pf1N1B4_480 at 572.037 kb on + strand, within Pf1N1B4_480 at 572.037 kb on + strand, within Pf1N1B4_480 at 572.037 kb on + strand, within Pf1N1B4_480 at 572.037 kb on + strand, within Pf1N1B4_480 at 572.037 kb on + strand, within Pf1N1B4_480 at 572.037 kb on + strand, within Pf1N1B4_480 at 572.038 kb on - strand, within Pf1N1B4_480 at 572.038 kb on - strand, within Pf1N1B4_480 at 572.038 kb on - strand, within Pf1N1B4_480 at 572.038 kb on - strand at 572.038 kb on - strand at 572.124 kb on + strand, within Pf1N1B4_480 at 572.124 kb on + strand, within Pf1N1B4_480 at 572.124 kb on + strand at 572.125 kb on - strand, within Pf1N1B4_480 at 572.125 kb on - strand, within Pf1N1B4_480 at 572.135 kb on + strand, within Pf1N1B4_480 at 572.416 kb on - strand, within Pf1N1B4_480 at 572.533 kb on + strand, within Pf1N1B4_480 at 572.533 kb on + strand, within Pf1N1B4_480 at 572.533 kb on + strand, within Pf1N1B4_480 at 572.533 kb on + strand, within Pf1N1B4_480 at 572.533 kb on + strand, within Pf1N1B4_480 at 572.533 kb on + strand, within Pf1N1B4_480 at 572.533 kb on + strand, within Pf1N1B4_480 at 572.534 kb on - strand, within Pf1N1B4_480 at 572.534 kb on - strand, within Pf1N1B4_480 at 572.534 kb on - strand, within Pf1N1B4_480 at 572.542 kb on - strand, within Pf1N1B4_480 at 572.547 kb on + strand, within Pf1N1B4_480 at 572.548 kb on - strand, within Pf1N1B4_480 at 572.548 kb on - strand, within Pf1N1B4_480 at 572.600 kb on + strand, within Pf1N1B4_480 at 572.600 kb on + strand, within Pf1N1B4_480 at 572.692 kb on + strand, within Pf1N1B4_480 at 572.693 kb on - strand, within Pf1N1B4_480 at 572.693 kb on - strand, within Pf1N1B4_480 at 572.693 kb on - strand, within Pf1N1B4_480 at 572.822 kb on - strand, within Pf1N1B4_480 at 573.095 kb on - strand at 573.153 kb on + strand at 573.153 kb on + strand at 573.153 kb on + strand at 573.154 kb on - strand at 573.154 kb on - strand at 573.156 kb on + strand at 573.156 kb on + strand at 573.156 kb on + strand at 573.156 kb on + strand at 573.156 kb on + strand at 573.156 kb on + strand at 573.157 kb on - strand at 573.157 kb on - strand at 573.157 kb on - strand at 573.157 kb on - strand at 573.157 kb on - strand at 573.157 kb on - strand at 573.157 kb on - strand at 573.181 kb on + strand at 573.181 kb on + strand at 573.181 kb on + strand at 573.182 kb on - strand at 573.182 kb on - strand at 573.183 kb on + strand at 573.183 kb on + strand at 573.183 kb on + strand at 573.184 kb on - strand at 573.184 kb on - strand at 573.184 kb on - strand at 573.184 kb on - strand at 573.184 kb on - strand at 573.214 kb on + strand at 573.214 kb on + strand at 573.214 kb on + strand at 573.214 kb on + strand at 573.215 kb on - strand at 573.215 kb on - strand at 573.215 kb on - strand at 573.215 kb on - strand at 573.284 kb on + strand, within Pf1N1B4_481 at 573.285 kb on - strand, within Pf1N1B4_481 at 573.285 kb on - strand, within Pf1N1B4_481 at 573.285 kb on - strand, within Pf1N1B4_481 at 573.386 kb on - strand, within Pf1N1B4_481 at 573.466 kb on + strand, within Pf1N1B4_481 at 573.466 kb on + strand, within Pf1N1B4_481 at 573.466 kb on + strand at 573.490 kb on + strand, within Pf1N1B4_481 at 573.490 kb on + strand, within Pf1N1B4_481 at 573.490 kb on + strand, within Pf1N1B4_481 at 573.490 kb on + strand, within Pf1N1B4_481 at 573.490 kb on + strand, within Pf1N1B4_481 at 573.490 kb on + strand, within Pf1N1B4_481 at 573.490 kb on + strand, within Pf1N1B4_481 at 573.490 kb on + strand, within Pf1N1B4_481 at 573.491 kb on - strand at 573.491 kb on - strand, within Pf1N1B4_481 at 573.491 kb on - strand, within Pf1N1B4_481 at 573.491 kb on - strand, within Pf1N1B4_481 at 573.491 kb on - strand, within Pf1N1B4_481 at 573.491 kb on - strand, within Pf1N1B4_481 at 573.491 kb on - strand, within Pf1N1B4_481 at 573.517 kb on + strand, within Pf1N1B4_481 at 573.593 kb on + strand at 573.662 kb on + strand at 573.663 kb on - strand at 573.855 kb on + strand at 573.855 kb on + strand at 573.855 kb on + strand at 573.856 kb on - strand at 573.856 kb on - strand at 573.937 kb on - strand, within Pf1N1B4_482 at 574.083 kb on + strand, within Pf1N1B4_482
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 569,931 + Pf1N1B4_478 0.26 +1.7 569,931 + Pf1N1B4_478 0.26 +0.5 569,932 - Pf1N1B4_478 0.26 -1.0 570,045 + Pf1N1B4_478 0.43 +1.5 570,045 + Pf1N1B4_478 0.43 +0.8 570,045 + Pf1N1B4_478 0.43 +0.0 570,046 - +0.0 570,047 + Pf1N1B4_478 0.43 +1.0 570,047 + Pf1N1B4_478 0.43 -2.2 570,047 + Pf1N1B4_478 0.43 +0.3 570,047 + Pf1N1B4_478 0.43 +0.0 570,047 + Pf1N1B4_478 0.43 -1.0 570,047 + Pf1N1B4_478 0.43 -1.0 570,047 + Pf1N1B4_478 0.43 -3.0 570,047 + Pf1N1B4_478 0.43 +0.3 570,048 - Pf1N1B4_478 0.43 +0.2 570,048 - Pf1N1B4_478 0.43 +0.9 570,048 - Pf1N1B4_478 0.43 -2.0 570,048 - Pf1N1B4_478 0.43 +0.2 570,058 - +1.0 570,121 + Pf1N1B4_478 0.54 +1.0 570,121 + Pf1N1B4_478 0.54 +1.0 570,171 - Pf1N1B4_478 0.62 +1.2 570,171 - Pf1N1B4_478 0.62 +0.2 570,171 - Pf1N1B4_478 0.62 -0.6 570,204 + Pf1N1B4_478 0.67 -0.4 570,204 + Pf1N1B4_478 0.67 +1.0 570,204 + Pf1N1B4_478 0.67 -1.0 570,205 - Pf1N1B4_478 0.67 +1.6 570,205 - Pf1N1B4_478 0.67 +0.0 570,267 + Pf1N1B4_478 0.77 +0.6 570,276 + Pf1N1B4_478 0.78 -0.4 570,276 + Pf1N1B4_478 0.78 +0.3 570,277 - Pf1N1B4_478 0.78 +1.8 570,277 - Pf1N1B4_478 0.78 +2.7 570,277 - Pf1N1B4_478 0.78 -1.6 570,277 - -2.0 570,277 - Pf1N1B4_478 0.78 +0.3 570,277 - Pf1N1B4_478 0.78 +1.0 570,300 + Pf1N1B4_478 0.82 +1.2 570,301 - Pf1N1B4_478 0.82 -0.2 570,303 + Pf1N1B4_478 0.82 +0.0 570,303 + Pf1N1B4_478 0.82 +0.2 570,303 + Pf1N1B4_478 0.82 +0.8 570,304 - +2.0 570,304 - Pf1N1B4_478 0.82 +0.8 570,304 - Pf1N1B4_478 0.82 +0.8 570,411 + +1.3 570,412 - -1.7 570,412 - +0.6 570,412 - +0.2 570,412 - +1.3 570,550 - +1.1 570,577 + +0.8 570,577 + +0.9 570,577 + +1.2 570,577 + -0.4 570,577 + -1.0 570,577 + +1.3 570,577 + -1.0 570,577 + +0.0 570,578 - +0.3 570,612 + +0.7 570,612 + +0.8 570,612 + +0.6 570,612 + +1.0 570,613 - -1.0 570,625 + +1.2 570,625 + +1.0 570,625 + +0.0 570,670 + -0.4 570,670 + -0.6 570,670 + -1.6 570,671 - -1.3 570,671 - +0.3 570,671 - +0.0 570,671 - +0.3 570,713 + Pf1N1B4_479 0.15 +3.0 570,767 + Pf1N1B4_479 0.34 +0.6 570,871 + Pf1N1B4_479 0.72 +1.0 570,871 + Pf1N1B4_479 0.72 +1.0 570,899 - Pf1N1B4_479 0.82 -1.0 570,899 - Pf1N1B4_479 0.82 +0.0 570,899 - Pf1N1B4_479 0.82 +0.3 571,221 + Pf1N1B4_480 0.13 +0.0 571,354 - Pf1N1B4_480 0.19 +0.0 571,515 + Pf1N1B4_480 0.27 +0.2 571,516 - -1.0 571,516 - Pf1N1B4_480 0.27 +0.0 571,566 + Pf1N1B4_480 0.29 +1.2 571,566 + Pf1N1B4_480 0.29 -1.0 571,567 - Pf1N1B4_480 0.29 +2.0 571,567 - Pf1N1B4_480 0.29 +0.4 571,567 - Pf1N1B4_480 0.29 +2.2 571,583 - Pf1N1B4_480 0.30 +0.0 571,646 - Pf1N1B4_480 0.33 -2.0 571,651 + Pf1N1B4_480 0.33 +1.0 571,652 - Pf1N1B4_480 0.33 -1.0 571,652 - Pf1N1B4_480 0.33 -1.0 571,652 - Pf1N1B4_480 0.33 +1.3 571,714 + -1.0 571,714 + Pf1N1B4_480 0.36 -0.2 571,714 + Pf1N1B4_480 0.36 +1.1 571,714 + Pf1N1B4_480 0.36 +0.2 571,714 + Pf1N1B4_480 0.36 +0.6 571,715 - Pf1N1B4_480 0.36 +0.8 571,715 - Pf1N1B4_480 0.36 +1.3 571,715 - Pf1N1B4_480 0.36 +0.0 571,715 - Pf1N1B4_480 0.36 -1.0 571,715 - Pf1N1B4_480 0.36 +1.3 571,715 - Pf1N1B4_480 0.36 +0.6 571,715 - Pf1N1B4_480 0.36 -0.7 571,715 - Pf1N1B4_480 0.36 -1.4 571,715 - Pf1N1B4_480 0.36 +1.3 571,949 + Pf1N1B4_480 0.47 +0.3 572,017 + Pf1N1B4_480 0.50 +0.0 572,037 + Pf1N1B4_480 0.51 -2.0 572,037 + Pf1N1B4_480 0.51 +0.5 572,037 + Pf1N1B4_480 0.51 +0.2 572,037 + Pf1N1B4_480 0.51 +0.0 572,037 + Pf1N1B4_480 0.51 -1.0 572,037 + Pf1N1B4_480 0.51 +0.6 572,037 + Pf1N1B4_480 0.51 +0.2 572,038 - Pf1N1B4_480 0.51 +0.0 572,038 - Pf1N1B4_480 0.51 -1.0 572,038 - Pf1N1B4_480 0.51 -0.2 572,038 - -1.0 572,038 - -1.0 572,124 + Pf1N1B4_480 0.55 +1.3 572,124 + Pf1N1B4_480 0.55 +0.8 572,124 + +1.0 572,125 - Pf1N1B4_480 0.55 -2.0 572,125 - Pf1N1B4_480 0.55 -1.6 572,135 + Pf1N1B4_480 0.55 +0.8 572,416 - Pf1N1B4_480 0.68 +1.0 572,533 + Pf1N1B4_480 0.73 +0.6 572,533 + Pf1N1B4_480 0.73 -1.0 572,533 + Pf1N1B4_480 0.73 +0.5 572,533 + Pf1N1B4_480 0.73 -0.2 572,533 + Pf1N1B4_480 0.73 +0.3 572,533 + Pf1N1B4_480 0.73 +1.7 572,533 + Pf1N1B4_480 0.73 +1.3 572,534 - Pf1N1B4_480 0.73 +0.2 572,534 - Pf1N1B4_480 0.73 +0.0 572,534 - Pf1N1B4_480 0.73 +1.6 572,542 - Pf1N1B4_480 0.74 -0.4 572,547 + Pf1N1B4_480 0.74 +2.0 572,548 - Pf1N1B4_480 0.74 +0.0 572,548 - Pf1N1B4_480 0.74 +0.1 572,600 + Pf1N1B4_480 0.76 +0.6 572,600 + Pf1N1B4_480 0.76 +0.3 572,692 + Pf1N1B4_480 0.80 +0.2 572,693 - Pf1N1B4_480 0.81 +0.6 572,693 - Pf1N1B4_480 0.81 +0.0 572,693 - Pf1N1B4_480 0.81 -2.0 572,822 - Pf1N1B4_480 0.86 -1.0 573,095 - -1.0 573,153 + +0.1 573,153 + -1.0 573,153 + -1.0 573,154 - +0.3 573,154 - -2.6 573,156 + +0.3 573,156 + +0.0 573,156 + +0.6 573,156 + +1.0 573,156 + +1.9 573,156 + +1.3 573,157 - +1.6 573,157 - +0.0 573,157 - +2.0 573,157 - -1.6 573,157 - -1.0 573,157 - -0.6 573,157 - +0.2 573,181 + +1.6 573,181 + -0.3 573,181 + +0.0 573,182 - +0.9 573,182 - +0.8 573,183 + +0.0 573,183 + -0.6 573,183 + +1.6 573,184 - +0.0 573,184 - -1.6 573,184 - +0.0 573,184 - +0.2 573,184 - +0.6 573,214 + +0.0 573,214 + +0.6 573,214 + -1.0 573,214 + -0.7 573,215 - +1.9 573,215 - +0.0 573,215 - -0.4 573,215 - +0.5 573,284 + Pf1N1B4_481 0.16 -0.2 573,285 - Pf1N1B4_481 0.16 +0.8 573,285 - Pf1N1B4_481 0.16 +2.2 573,285 - Pf1N1B4_481 0.16 -1.0 573,386 - Pf1N1B4_481 0.41 +1.9 573,466 + Pf1N1B4_481 0.60 +1.0 573,466 + Pf1N1B4_481 0.60 +1.3 573,466 + -1.0 573,490 + Pf1N1B4_481 0.66 +1.0 573,490 + Pf1N1B4_481 0.66 +0.6 573,490 + Pf1N1B4_481 0.66 -1.0 573,490 + Pf1N1B4_481 0.66 -0.4 573,490 + Pf1N1B4_481 0.66 +1.1 573,490 + Pf1N1B4_481 0.66 -1.0 573,490 + Pf1N1B4_481 0.66 -1.0 573,490 + Pf1N1B4_481 0.66 +1.3 573,491 - +0.0 573,491 - Pf1N1B4_481 0.66 +2.6 573,491 - Pf1N1B4_481 0.66 +0.0 573,491 - Pf1N1B4_481 0.66 +0.2 573,491 - Pf1N1B4_481 0.66 +0.2 573,491 - Pf1N1B4_481 0.66 -3.3 573,491 - Pf1N1B4_481 0.66 -0.2 573,517 + Pf1N1B4_481 0.73 +0.6 573,593 + -1.0 573,662 + +0.5 573,663 - -1.0 573,855 + -1.0 573,855 + +1.3 573,855 + -1.0 573,856 - -0.2 573,856 - +0.8 573,937 - Pf1N1B4_482 0.11 +1.8 574,083 + Pf1N1B4_482 0.26 -0.7
Or see this region's nucleotide sequence