Strain Fitness in Dechlorosoma suillum PS around Dsui_3394

Experiment: ALP with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3393 and Dsui_3394 are separated by 186 nucleotidesDsui_3394 and Dsui_3395 are separated by 64 nucleotides Dsui_3393: Dsui_3393 - Kef-type K+ transport system, membrane component, at 3,637,154 to 3,638,398 _3393 Dsui_3394: Dsui_3394 - P-type ATPase, translocating, at 3,638,585 to 3,641,332 _3394 Dsui_3395: Dsui_3395 - arabinose efflux permease family protein, at 3,641,397 to 3,642,602 _3395 Position (kb) 3638 3639 3640 3641 3642Strain fitness (log2 ratio) -3 -2 -1 0 1at 3637.635 kb on - strand, within Dsui_3393at 3638.032 kb on - strand, within Dsui_3393at 3638.148 kb on - strand, within Dsui_3393at 3638.248 kb on + strand, within Dsui_3393at 3638.298 kb on + strandat 3638.421 kb on + strandat 3638.481 kb on + strandat 3638.481 kb on + strandat 3638.494 kb on - strandat 3638.559 kb on - strandat 3638.573 kb on + strandat 3638.591 kb on - strandat 3638.673 kb on + strandat 3638.763 kb on + strandat 3638.763 kb on - strandat 3638.785 kb on + strandat 3638.793 kb on - strandat 3638.848 kb on + strandat 3638.872 kb on - strandat 3638.921 kb on - strand, within Dsui_3394at 3638.925 kb on + strandat 3638.939 kb on - strand, within Dsui_3394at 3639.009 kb on - strand, within Dsui_3394at 3639.114 kb on + strand, within Dsui_3394at 3639.186 kb on + strand, within Dsui_3394at 3639.220 kb on + strand, within Dsui_3394at 3639.220 kb on + strandat 3639.258 kb on + strand, within Dsui_3394at 3639.264 kb on + strand, within Dsui_3394at 3639.266 kb on - strand, within Dsui_3394at 3639.337 kb on + strandat 3639.348 kb on + strandat 3639.380 kb on + strandat 3639.411 kb on - strand, within Dsui_3394at 3639.474 kb on + strandat 3639.718 kb on + strandat 3639.726 kb on - strand, within Dsui_3394at 3639.726 kb on - strand, within Dsui_3394at 3639.984 kb on + strandat 3639.992 kb on - strandat 3640.030 kb on + strand, within Dsui_3394at 3640.038 kb on - strand, within Dsui_3394at 3640.038 kb on - strand, within Dsui_3394at 3640.043 kb on - strand, within Dsui_3394at 3640.077 kb on + strandat 3640.092 kb on + strand, within Dsui_3394at 3640.131 kb on + strandat 3640.179 kb on - strand, within Dsui_3394at 3640.333 kb on + strand, within Dsui_3394at 3640.333 kb on + strand, within Dsui_3394at 3640.341 kb on - strand, within Dsui_3394at 3640.537 kb on + strand, within Dsui_3394at 3640.783 kb on - strand, within Dsui_3394at 3640.793 kb on - strandat 3640.845 kb on + strand, within Dsui_3394at 3640.976 kb on + strandat 3641.042 kb on + strand, within Dsui_3394at 3641.063 kb on - strandat 3641.095 kb on - strandat 3641.173 kb on + strandat 3641.190 kb on + strandat 3641.272 kb on + strandat 3641.358 kb on + strandat 3641.366 kb on - strandat 3641.371 kb on + strandat 3641.380 kb on - strandat 3641.630 kb on + strandat 3641.696 kb on - strandat 3641.713 kb on + strandat 3641.747 kb on - strandat 3641.945 kb on + strandat 3642.003 kb on + strandat 3642.021 kb on - strandat 3642.261 kb on + strandat 3642.307 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml
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3,637,635 - Dsui_3393 0.39 -3.4
3,638,032 - Dsui_3393 0.71 -2.4
3,638,148 - Dsui_3393 0.80 -2.6
3,638,248 + Dsui_3393 0.88 -1.6
3,638,298 + +0.7
3,638,421 + -0.3
3,638,481 + +0.7
3,638,481 + +0.7
3,638,494 - -2.2
3,638,559 - -0.4
3,638,573 + -0.3
3,638,591 - -0.9
3,638,673 + +0.7
3,638,763 + -1.6
3,638,763 - +0.2
3,638,785 + +0.7
3,638,793 - -2.1
3,638,848 + -2.1
3,638,872 - -0.3
3,638,921 - Dsui_3394 0.12 -0.4
3,638,925 + +0.7
3,638,939 - Dsui_3394 0.13 +0.3
3,639,009 - Dsui_3394 0.15 +1.1
3,639,114 + Dsui_3394 0.19 +0.7
3,639,186 + Dsui_3394 0.22 -0.3
3,639,220 + Dsui_3394 0.23 -1.3
3,639,220 + +0.7
3,639,258 + Dsui_3394 0.24 +0.7
3,639,264 + Dsui_3394 0.25 +0.7
3,639,266 - Dsui_3394 0.25 -0.3
3,639,337 + +0.7
3,639,348 + +0.7
3,639,380 + +0.7
3,639,411 - Dsui_3394 0.30 -0.3
3,639,474 + +0.7
3,639,718 + -1.3
3,639,726 - Dsui_3394 0.42 -1.1
3,639,726 - Dsui_3394 0.42 -0.4
3,639,984 + -0.3
3,639,992 - +0.7
3,640,030 + Dsui_3394 0.53 -1.9
3,640,038 - Dsui_3394 0.53 -0.9
3,640,038 - Dsui_3394 0.53 -1.9
3,640,043 - Dsui_3394 0.53 +1.0
3,640,077 + +0.7
3,640,092 + Dsui_3394 0.55 -0.3
3,640,131 + +0.7
3,640,179 - Dsui_3394 0.58 -1.7
3,640,333 + Dsui_3394 0.64 -0.9
3,640,333 + Dsui_3394 0.64 -1.3
3,640,341 - Dsui_3394 0.64 +0.5
3,640,537 + Dsui_3394 0.71 -0.3
3,640,783 - Dsui_3394 0.80 -1.6
3,640,793 - +0.7
3,640,845 + Dsui_3394 0.82 -0.9
3,640,976 + +0.7
3,641,042 + Dsui_3394 0.89 -0.9
3,641,063 - -0.3
3,641,095 - +0.3
3,641,173 + +0.7
3,641,190 + +0.7
3,641,272 + +0.7
3,641,358 + -0.9
3,641,366 - +0.4
3,641,371 + -1.6
3,641,380 - +0.7
3,641,630 + -1.6
3,641,696 - +0.7
3,641,713 + +0.7
3,641,747 - +0.7
3,641,945 + +0.7
3,642,003 + -0.9
3,642,021 - +0.7
3,642,261 + +0.7
3,642,307 + -0.3

Or see this region's nucleotide sequence