Experiment: ALP with Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3388 and Dsui_3389 are separated by 135 nucleotides Dsui_3389 and Dsui_3390 are separated by 19 nucleotides Dsui_3390 and Dsui_3391 are separated by 24 nucleotides
Dsui_3388: Dsui_3388 - hypothetical protein, at 3,632,260 to 3,633,627
_3388
Dsui_3389: Dsui_3389 - enoyl-CoA hydratase/carnithine racemase, at 3,633,763 to 3,634,542
_3389
Dsui_3390: Dsui_3390 - hypothetical protein, at 3,634,562 to 3,635,101
_3390
Dsui_3391: Dsui_3391 - putative glutamine amidotransferase, at 3,635,126 to 3,635,905
_3391
Position (kb)
3633
3634
3635 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3632.817 kb on + strand, within Dsui_3388 at 3632.845 kb on + strand, within Dsui_3388 at 3632.853 kb on - strand, within Dsui_3388 at 3632.927 kb on + strand, within Dsui_3388 at 3632.937 kb on + strand, within Dsui_3388 at 3633.010 kb on - strand, within Dsui_3388 at 3633.043 kb on - strand, within Dsui_3388 at 3633.049 kb on + strand, within Dsui_3388 at 3633.054 kb on + strand at 3633.057 kb on - strand, within Dsui_3388 at 3633.157 kb on - strand, within Dsui_3388 at 3633.192 kb on + strand, within Dsui_3388 at 3633.264 kb on + strand, within Dsui_3388 at 3633.271 kb on + strand, within Dsui_3388 at 3633.369 kb on + strand at 3633.383 kb on - strand, within Dsui_3388 at 3633.407 kb on + strand, within Dsui_3388 at 3633.415 kb on - strand, within Dsui_3388 at 3633.415 kb on - strand, within Dsui_3388 at 3633.453 kb on + strand, within Dsui_3388 at 3633.466 kb on + strand, within Dsui_3388 at 3633.471 kb on + strand at 3633.508 kb on + strand at 3633.539 kb on - strand at 3633.632 kb on - strand at 3633.740 kb on - strand at 3633.956 kb on + strand, within Dsui_3389 at 3634.002 kb on - strand, within Dsui_3389 at 3634.063 kb on - strand, within Dsui_3389 at 3634.073 kb on - strand at 3634.120 kb on + strand, within Dsui_3389 at 3634.181 kb on + strand, within Dsui_3389 at 3634.203 kb on - strand, within Dsui_3389 at 3634.346 kb on - strand, within Dsui_3389 at 3634.453 kb on - strand, within Dsui_3389 at 3634.465 kb on + strand at 3634.465 kb on + strand at 3634.465 kb on + strand at 3634.465 kb on + strand at 3634.465 kb on + strand at 3634.465 kb on + strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.529 kb on + strand at 3634.529 kb on + strand at 3634.542 kb on + strand at 3634.644 kb on - strand, within Dsui_3390 at 3634.670 kb on + strand, within Dsui_3390 at 3634.688 kb on - strand, within Dsui_3390 at 3634.696 kb on + strand, within Dsui_3390 at 3634.697 kb on - strand, within Dsui_3390 at 3634.742 kb on - strand, within Dsui_3390 at 3634.749 kb on + strand at 3634.757 kb on - strand, within Dsui_3390 at 3634.761 kb on + strand, within Dsui_3390 at 3634.761 kb on + strand, within Dsui_3390 at 3634.761 kb on + strand at 3634.769 kb on - strand, within Dsui_3390 at 3634.795 kb on - strand, within Dsui_3390 at 3634.805 kb on - strand, within Dsui_3390 at 3634.828 kb on + strand, within Dsui_3390 at 3634.828 kb on + strand, within Dsui_3390 at 3634.836 kb on - strand, within Dsui_3390 at 3634.876 kb on - strand, within Dsui_3390 at 3634.886 kb on - strand, within Dsui_3390 at 3634.923 kb on + strand at 3634.926 kb on - strand, within Dsui_3390 at 3634.931 kb on - strand, within Dsui_3390 at 3634.941 kb on - strand, within Dsui_3390 at 3635.000 kb on + strand at 3635.040 kb on + strand, within Dsui_3390 at 3635.041 kb on - strand, within Dsui_3390 at 3635.048 kb on - strand at 3635.048 kb on - strand at 3635.081 kb on - strand at 3635.110 kb on - strand at 3635.110 kb on - strand at 3635.110 kb on - strand at 3635.148 kb on - strand at 3635.178 kb on + strand at 3635.186 kb on - strand at 3635.193 kb on + strand at 3635.205 kb on - strand, within Dsui_3391 at 3635.265 kb on + strand, within Dsui_3391 at 3635.273 kb on - strand, within Dsui_3391 at 3635.378 kb on - strand, within Dsui_3391 at 3635.412 kb on + strand, within Dsui_3391 at 3635.420 kb on - strand, within Dsui_3391 at 3635.434 kb on - strand, within Dsui_3391 at 3635.503 kb on - strand, within Dsui_3391
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml remove 3,632,817 + Dsui_3388 0.41 -1.3 3,632,845 + Dsui_3388 0.43 -1.6 3,632,853 - Dsui_3388 0.43 -1.3 3,632,927 + Dsui_3388 0.49 +0.7 3,632,937 + Dsui_3388 0.49 -0.9 3,633,010 - Dsui_3388 0.55 -0.9 3,633,043 - Dsui_3388 0.57 -0.3 3,633,049 + Dsui_3388 0.58 +0.7 3,633,054 + -0.3 3,633,057 - Dsui_3388 0.58 -2.1 3,633,157 - Dsui_3388 0.66 +0.7 3,633,192 + Dsui_3388 0.68 -0.2 3,633,264 + Dsui_3388 0.73 +0.7 3,633,271 + Dsui_3388 0.74 +0.7 3,633,369 + -1.6 3,633,383 - Dsui_3388 0.82 -2.9 3,633,407 + Dsui_3388 0.84 -0.3 3,633,415 - Dsui_3388 0.84 -0.6 3,633,415 - Dsui_3388 0.84 -1.9 3,633,453 + Dsui_3388 0.87 -1.3 3,633,466 + Dsui_3388 0.88 -0.3 3,633,471 + -0.3 3,633,508 + -1.9 3,633,539 - -0.3 3,633,632 - -0.3 3,633,740 - +0.7 3,633,956 + Dsui_3389 0.25 -2.3 3,634,002 - Dsui_3389 0.31 +0.7 3,634,063 - Dsui_3389 0.38 +0.7 3,634,073 - +0.7 3,634,120 + Dsui_3389 0.46 -0.3 3,634,181 + Dsui_3389 0.54 -1.6 3,634,203 - Dsui_3389 0.56 -2.1 3,634,346 - Dsui_3389 0.75 +0.7 3,634,453 - Dsui_3389 0.88 -0.3 3,634,465 + +0.7 3,634,465 + +0.7 3,634,465 + -0.3 3,634,465 + +0.7 3,634,465 + +0.7 3,634,465 + +0.7 3,634,473 - -0.3 3,634,473 - +0.7 3,634,473 - -1.6 3,634,473 - -1.6 3,634,473 - +0.7 3,634,473 - +0.7 3,634,473 - -0.9 3,634,473 - -2.3 3,634,473 - +0.7 3,634,529 + -1.3 3,634,529 + -0.3 3,634,542 + -0.9 3,634,644 - Dsui_3390 0.15 -1.1 3,634,670 + Dsui_3390 0.20 +0.7 3,634,688 - Dsui_3390 0.23 -1.7 3,634,696 + Dsui_3390 0.25 -0.3 3,634,697 - Dsui_3390 0.25 -1.2 3,634,742 - Dsui_3390 0.33 +0.0 3,634,749 + +0.7 3,634,757 - Dsui_3390 0.36 -2.1 3,634,761 + Dsui_3390 0.37 -0.3 3,634,761 + Dsui_3390 0.37 +0.7 3,634,761 + +0.7 3,634,769 - Dsui_3390 0.38 -1.3 3,634,795 - Dsui_3390 0.43 +0.3 3,634,805 - Dsui_3390 0.45 -0.8 3,634,828 + Dsui_3390 0.49 -0.9 3,634,828 + Dsui_3390 0.49 -0.9 3,634,836 - Dsui_3390 0.51 -0.7 3,634,876 - Dsui_3390 0.58 -0.7 3,634,886 - Dsui_3390 0.60 -0.5 3,634,923 + +0.7 3,634,926 - Dsui_3390 0.67 -0.2 3,634,931 - Dsui_3390 0.68 -1.6 3,634,941 - Dsui_3390 0.70 -1.7 3,635,000 + -0.3 3,635,040 + Dsui_3390 0.89 +0.7 3,635,041 - Dsui_3390 0.89 -0.4 3,635,048 - -0.1 3,635,048 - -0.3 3,635,081 - -0.8 3,635,110 - -0.8 3,635,110 - -0.3 3,635,110 - -0.3 3,635,148 - -1.9 3,635,178 + -0.3 3,635,186 - -0.4 3,635,193 + +0.7 3,635,205 - Dsui_3391 0.10 -0.5 3,635,265 + Dsui_3391 0.18 +0.7 3,635,273 - Dsui_3391 0.19 -0.3 3,635,378 - Dsui_3391 0.32 +1.1 3,635,412 + Dsui_3391 0.37 -0.9 3,635,420 - Dsui_3391 0.38 +0.4 3,635,434 - Dsui_3391 0.39 -0.1 3,635,503 - Dsui_3391 0.48 +0.2
Or see this region's nucleotide sequence