Strain Fitness in Dechlorosoma suillum PS around Dsui_3211

Experiment: ALP with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3209 and Dsui_3210 are separated by 10 nucleotidesDsui_3210 and Dsui_3211 are separated by 241 nucleotidesDsui_3211 and Dsui_3212 are separated by 69 nucleotides Dsui_3209: Dsui_3209 - putative esterase of the alpha/beta hydrolase fold protein, at 3,444,002 to 3,444,538 _3209 Dsui_3210: Dsui_3210 - hypothetical protein, at 3,444,549 to 3,445,031 _3210 Dsui_3211: Dsui_3211 - glutamate dehydrogenase/leucine dehydrogenase, at 3,445,273 to 3,446,619 _3211 Dsui_3212: Dsui_3212 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 3,446,689 to 3,448,356 _3212 Position (kb) 3445 3446 3447Strain fitness (log2 ratio) -3 -2 -1 0 1at 3444.291 kb on - strand, within Dsui_3209at 3444.304 kb on - strand, within Dsui_3209at 3444.347 kb on + strand, within Dsui_3209at 3444.365 kb on - strandat 3444.433 kb on + strand, within Dsui_3209at 3444.469 kb on + strand, within Dsui_3209at 3444.477 kb on - strandat 3444.525 kb on + strandat 3444.654 kb on - strand, within Dsui_3210at 3444.717 kb on + strand, within Dsui_3210at 3444.773 kb on - strand, within Dsui_3210at 3444.836 kb on + strand, within Dsui_3210at 3444.894 kb on + strand, within Dsui_3210at 3444.987 kb on - strandat 3445.009 kb on + strandat 3445.029 kb on + strandat 3445.057 kb on + strandat 3445.124 kb on - strandat 3445.159 kb on - strandat 3445.185 kb on + strandat 3445.211 kb on - strandat 3445.319 kb on - strandat 3445.360 kb on - strandat 3445.466 kb on + strand, within Dsui_3211at 3445.474 kb on - strand, within Dsui_3211at 3445.485 kb on + strand, within Dsui_3211at 3445.493 kb on - strand, within Dsui_3211at 3445.493 kb on - strand, within Dsui_3211at 3445.536 kb on + strand, within Dsui_3211at 3445.632 kb on + strand, within Dsui_3211at 3445.674 kb on + strand, within Dsui_3211at 3445.674 kb on + strand, within Dsui_3211at 3445.682 kb on - strand, within Dsui_3211at 3445.797 kb on - strandat 3445.889 kb on - strandat 3445.983 kb on - strand, within Dsui_3211at 3446.075 kb on + strand, within Dsui_3211at 3446.206 kb on - strand, within Dsui_3211at 3446.261 kb on + strand, within Dsui_3211at 3446.329 kb on - strand, within Dsui_3211at 3446.384 kb on + strand, within Dsui_3211at 3446.429 kb on + strand, within Dsui_3211at 3446.464 kb on - strand, within Dsui_3211at 3446.775 kb on + strandat 3446.798 kb on - strandat 3446.807 kb on + strandat 3446.817 kb on + strandat 3446.837 kb on + strandat 3446.892 kb on - strand, within Dsui_3212at 3446.979 kb on - strand, within Dsui_3212at 3447.062 kb on + strandat 3447.070 kb on - strand, within Dsui_3212at 3447.096 kb on + strand, within Dsui_3212at 3447.142 kb on + strand, within Dsui_3212at 3447.171 kb on + strandat 3447.237 kb on + strand, within Dsui_3212at 3447.245 kb on + strand, within Dsui_3212at 3447.246 kb on + strand, within Dsui_3212at 3447.358 kb on + strandat 3447.366 kb on - strand, within Dsui_3212at 3447.366 kb on - strand, within Dsui_3212at 3447.433 kb on + strandat 3447.438 kb on + strand, within Dsui_3212at 3447.474 kb on - strand, within Dsui_3212at 3447.486 kb on - strand, within Dsui_3212at 3447.540 kb on + strand, within Dsui_3212at 3447.549 kb on - strand, within Dsui_3212at 3447.559 kb on - strand, within Dsui_3212at 3447.561 kb on + strand, within Dsui_3212

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml
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3,444,291 - Dsui_3209 0.54 +0.6
3,444,304 - Dsui_3209 0.56 +0.6
3,444,347 + Dsui_3209 0.64 +0.2
3,444,365 - -0.4
3,444,433 + Dsui_3209 0.80 -0.4
3,444,469 + Dsui_3209 0.87 +0.4
3,444,477 - +0.6
3,444,525 + -0.5
3,444,654 - Dsui_3210 0.22 -0.4
3,444,717 + Dsui_3210 0.35 +0.2
3,444,773 - Dsui_3210 0.46 -1.7
3,444,836 + Dsui_3210 0.59 -0.4
3,444,894 + Dsui_3210 0.71 -0.4
3,444,987 - -0.4
3,445,009 + -2.0
3,445,029 + +0.6
3,445,057 + +0.0
3,445,124 - -1.4
3,445,159 - +0.6
3,445,185 + -1.0
3,445,211 - -2.0
3,445,319 - +0.6
3,445,360 - -1.7
3,445,466 + Dsui_3211 0.14 -3.1
3,445,474 - Dsui_3211 0.15 -0.9
3,445,485 + Dsui_3211 0.16 -2.2
3,445,493 - Dsui_3211 0.16 -1.7
3,445,493 - Dsui_3211 0.16 -0.4
3,445,536 + Dsui_3211 0.20 -1.9
3,445,632 + Dsui_3211 0.27 -2.6
3,445,674 + Dsui_3211 0.30 -2.1
3,445,674 + Dsui_3211 0.30 -2.3
3,445,682 - Dsui_3211 0.30 +0.6
3,445,797 - +0.6
3,445,889 - +0.6
3,445,983 - Dsui_3211 0.53 -0.4
3,446,075 + Dsui_3211 0.60 -2.1
3,446,206 - Dsui_3211 0.69 -0.4
3,446,261 + Dsui_3211 0.73 -1.7
3,446,329 - Dsui_3211 0.78 +0.6
3,446,384 + Dsui_3211 0.82 -1.7
3,446,429 + Dsui_3211 0.86 -1.8
3,446,464 - Dsui_3211 0.88 +0.6
3,446,775 + -0.4
3,446,798 - +1.3
3,446,807 + -0.4
3,446,817 + -2.2
3,446,837 + -1.7
3,446,892 - Dsui_3212 0.12 -0.2
3,446,979 - Dsui_3212 0.17 +0.3
3,447,062 + +0.6
3,447,070 - Dsui_3212 0.23 +0.2
3,447,096 + Dsui_3212 0.24 -0.9
3,447,142 + Dsui_3212 0.27 +0.6
3,447,171 + +0.6
3,447,237 + Dsui_3212 0.33 -0.4
3,447,245 + Dsui_3212 0.33 +0.6
3,447,246 + Dsui_3212 0.33 -1.9
3,447,358 + +0.6
3,447,366 - Dsui_3212 0.41 -0.4
3,447,366 - Dsui_3212 0.41 +0.8
3,447,433 + +0.6
3,447,438 + Dsui_3212 0.45 +0.6
3,447,474 - Dsui_3212 0.47 -0.3
3,447,486 - Dsui_3212 0.48 -0.2
3,447,540 + Dsui_3212 0.51 -0.9
3,447,549 - Dsui_3212 0.52 -0.5
3,447,559 - Dsui_3212 0.52 -0.5
3,447,561 + Dsui_3212 0.52 -1.7

Or see this region's nucleotide sequence