Strain Fitness in Dechlorosoma suillum PS around Dsui_2943

Experiment: ALP with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2942 and Dsui_2943 are separated by 88 nucleotidesDsui_2943 and Dsui_2944 are separated by 149 nucleotides Dsui_2942: Dsui_2942 - ABC-type Fe3+ transport system, permease component, at 3,147,011 to 3,148,663 _2942 Dsui_2943: Dsui_2943 - ABC-type spermidine/putrescine transport system, ATPase component, at 3,148,752 to 3,149,822 _2943 Dsui_2944: Dsui_2944 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,149,972 to 3,151,684 _2944 Position (kb) 3148 3149 3150Strain fitness (log2 ratio) -2 -1 0 1at 3147.827 kb on - strand, within Dsui_2942at 3148.009 kb on - strand, within Dsui_2942at 3148.052 kb on - strand, within Dsui_2942at 3148.096 kb on - strand, within Dsui_2942at 3148.134 kb on - strand, within Dsui_2942at 3148.134 kb on - strand, within Dsui_2942at 3148.169 kb on - strand, within Dsui_2942at 3148.169 kb on - strand, within Dsui_2942at 3148.208 kb on + strandat 3148.218 kb on - strand, within Dsui_2942at 3148.286 kb on - strand, within Dsui_2942at 3148.318 kb on - strand, within Dsui_2942at 3148.318 kb on - strand, within Dsui_2942at 3148.318 kb on - strand, within Dsui_2942at 3148.318 kb on - strand, within Dsui_2942at 3148.363 kb on - strand, within Dsui_2942at 3148.367 kb on + strandat 3148.454 kb on - strand, within Dsui_2942at 3148.465 kb on + strandat 3148.468 kb on - strand, within Dsui_2942at 3148.495 kb on + strand, within Dsui_2942at 3148.587 kb on + strandat 3148.732 kb on + strandat 3148.732 kb on + strandat 3148.744 kb on + strandat 3148.744 kb on + strandat 3148.752 kb on - strandat 3148.752 kb on - strandat 3148.784 kb on + strandat 3148.784 kb on + strandat 3148.792 kb on - strandat 3148.803 kb on + strandat 3149.019 kb on - strand, within Dsui_2943at 3149.060 kb on - strandat 3149.247 kb on + strand, within Dsui_2943at 3149.326 kb on + strand, within Dsui_2943at 3149.336 kb on + strand, within Dsui_2943at 3149.406 kb on + strand, within Dsui_2943at 3149.462 kb on + strand, within Dsui_2943at 3149.479 kb on + strand, within Dsui_2943at 3149.597 kb on + strand, within Dsui_2943at 3149.635 kb on - strand, within Dsui_2943at 3149.654 kb on + strand, within Dsui_2943at 3149.681 kb on + strand, within Dsui_2943at 3149.689 kb on - strandat 3149.689 kb on - strandat 3149.689 kb on - strandat 3149.730 kb on - strandat 3149.743 kb on + strandat 3149.781 kb on - strandat 3149.968 kb on + strandat 3149.968 kb on + strandat 3150.066 kb on - strandat 3150.124 kb on + strandat 3150.126 kb on - strandat 3150.140 kb on + strandat 3150.239 kb on + strand, within Dsui_2944at 3150.239 kb on + strand, within Dsui_2944at 3150.247 kb on - strandat 3150.277 kb on + strand, within Dsui_2944at 3150.385 kb on + strand, within Dsui_2944at 3150.397 kb on - strand, within Dsui_2944at 3150.438 kb on - strand, within Dsui_2944at 3150.475 kb on + strand, within Dsui_2944at 3150.483 kb on - strand, within Dsui_2944at 3150.541 kb on + strand, within Dsui_2944at 3150.597 kb on - strand, within Dsui_2944at 3150.705 kb on - strand, within Dsui_2944at 3150.721 kb on + strand, within Dsui_2944at 3150.721 kb on + strand, within Dsui_2944at 3150.729 kb on - strand, within Dsui_2944at 3150.798 kb on + strand, within Dsui_2944

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml
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3,147,827 - Dsui_2942 0.49 -0.2
3,148,009 - Dsui_2942 0.60 -0.4
3,148,052 - Dsui_2942 0.63 -0.2
3,148,096 - Dsui_2942 0.66 -0.4
3,148,134 - Dsui_2942 0.68 -0.4
3,148,134 - Dsui_2942 0.68 +0.2
3,148,169 - Dsui_2942 0.70 -0.9
3,148,169 - Dsui_2942 0.70 -0.6
3,148,208 + -0.2
3,148,218 - Dsui_2942 0.73 -0.4
3,148,286 - Dsui_2942 0.77 -0.6
3,148,318 - Dsui_2942 0.79 -0.6
3,148,318 - Dsui_2942 0.79 +0.0
3,148,318 - Dsui_2942 0.79 -0.6
3,148,318 - Dsui_2942 0.79 -0.6
3,148,363 - Dsui_2942 0.82 -0.7
3,148,367 + -0.2
3,148,454 - Dsui_2942 0.87 -0.1
3,148,465 + +0.8
3,148,468 - Dsui_2942 0.88 -0.3
3,148,495 + Dsui_2942 0.90 -1.2
3,148,587 + +0.8
3,148,732 + -1.1
3,148,732 + -0.8
3,148,744 + -0.7
3,148,744 + -0.5
3,148,752 - -0.8
3,148,752 - +0.8
3,148,784 + -0.6
3,148,784 + -0.4
3,148,792 - -0.2
3,148,803 + -0.5
3,149,019 - Dsui_2943 0.25 -1.8
3,149,060 - +0.8
3,149,247 + Dsui_2943 0.46 -0.5
3,149,326 + Dsui_2943 0.54 -0.6
3,149,336 + Dsui_2943 0.55 -0.2
3,149,406 + Dsui_2943 0.61 -0.2
3,149,462 + Dsui_2943 0.66 -0.1
3,149,479 + Dsui_2943 0.68 -0.3
3,149,597 + Dsui_2943 0.79 -0.4
3,149,635 - Dsui_2943 0.82 -1.6
3,149,654 + Dsui_2943 0.84 -0.7
3,149,681 + Dsui_2943 0.87 -0.9
3,149,689 - +0.8
3,149,689 - +0.8
3,149,689 - +0.8
3,149,730 - -1.2
3,149,743 + -0.0
3,149,781 - -0.2
3,149,968 + +0.1
3,149,968 + -0.2
3,150,066 - -0.8
3,150,124 + -0.2
3,150,126 - -1.8
3,150,140 + +0.1
3,150,239 + Dsui_2944 0.16 +0.2
3,150,239 + Dsui_2944 0.16 -0.2
3,150,247 - -0.2
3,150,277 + Dsui_2944 0.18 -0.4
3,150,385 + Dsui_2944 0.24 -0.2
3,150,397 - Dsui_2944 0.25 -0.8
3,150,438 - Dsui_2944 0.27 +0.8
3,150,475 + Dsui_2944 0.29 -0.0
3,150,483 - Dsui_2944 0.30 -1.2
3,150,541 + Dsui_2944 0.33 -0.2
3,150,597 - Dsui_2944 0.36 -0.2
3,150,705 - Dsui_2944 0.43 -0.8
3,150,721 + Dsui_2944 0.44 -0.4
3,150,721 + Dsui_2944 0.44 -0.5
3,150,729 - Dsui_2944 0.44 -1.2
3,150,798 + Dsui_2944 0.48 -0.6

Or see this region's nucleotide sequence