Experiment: ALP with Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2509 and Dsui_2510 are separated by 11 nucleotides Dsui_2510 and Dsui_2511 are separated by 10 nucleotides Dsui_2511 and Dsui_2512 overlap by 17 nucleotides
Dsui_2509: Dsui_2509 - formate-dependent nitrite reductase, membrane component, at 2,656,153 to 2,657,223
_2509
Dsui_2510: Dsui_2510 - anaerobic dehydrogenase, typically selenocysteine-containing, at 2,657,235 to 2,660,321
_2510
Dsui_2511: Dsui_2511 - response regulator, at 2,660,332 to 2,660,964
_2511
Dsui_2512: Dsui_2512 - histidine kinase, at 2,660,948 to 2,662,669
_2512
Position (kb)
2657
2658
2659
2660
2661 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2656.250 kb on + strand at 2656.348 kb on - strand, within Dsui_2509 at 2656.432 kb on + strand, within Dsui_2509 at 2656.462 kb on - strand, within Dsui_2509 at 2656.462 kb on - strand, within Dsui_2509 at 2656.468 kb on + strand, within Dsui_2509 at 2656.495 kb on - strand, within Dsui_2509 at 2656.683 kb on + strand, within Dsui_2509 at 2656.755 kb on + strand, within Dsui_2509 at 2656.763 kb on - strand, within Dsui_2509 at 2656.770 kb on - strand, within Dsui_2509 at 2656.817 kb on + strand, within Dsui_2509 at 2656.823 kb on - strand, within Dsui_2509 at 2656.825 kb on - strand, within Dsui_2509 at 2656.944 kb on + strand, within Dsui_2509 at 2656.974 kb on - strand, within Dsui_2509 at 2657.001 kb on + strand, within Dsui_2509 at 2657.016 kb on + strand, within Dsui_2509 at 2657.038 kb on - strand, within Dsui_2509 at 2657.074 kb on - strand, within Dsui_2509 at 2657.096 kb on + strand, within Dsui_2509 at 2657.179 kb on + strand at 2657.187 kb on - strand at 2657.189 kb on + strand at 2657.197 kb on - strand at 2657.197 kb on - strand at 2657.394 kb on - strand at 2657.649 kb on + strand, within Dsui_2510 at 2657.930 kb on - strand, within Dsui_2510 at 2658.008 kb on - strand, within Dsui_2510 at 2658.038 kb on + strand, within Dsui_2510 at 2658.114 kb on - strand, within Dsui_2510 at 2658.142 kb on - strand, within Dsui_2510 at 2658.158 kb on + strand, within Dsui_2510 at 2658.158 kb on + strand, within Dsui_2510 at 2658.204 kb on - strand, within Dsui_2510 at 2658.209 kb on - strand, within Dsui_2510 at 2658.214 kb on - strand, within Dsui_2510 at 2658.497 kb on + strand, within Dsui_2510 at 2658.522 kb on - strand, within Dsui_2510 at 2658.559 kb on + strand, within Dsui_2510 at 2658.567 kb on - strand, within Dsui_2510 at 2658.681 kb on - strand, within Dsui_2510 at 2658.689 kb on - strand, within Dsui_2510 at 2658.717 kb on + strand, within Dsui_2510 at 2658.772 kb on - strand, within Dsui_2510 at 2658.799 kb on + strand, within Dsui_2510 at 2658.809 kb on + strand, within Dsui_2510 at 2658.812 kb on - strand, within Dsui_2510 at 2658.817 kb on - strand, within Dsui_2510 at 2658.882 kb on - strand, within Dsui_2510 at 2658.995 kb on + strand, within Dsui_2510 at 2659.002 kb on + strand, within Dsui_2510 at 2659.013 kb on + strand, within Dsui_2510 at 2659.110 kb on + strand, within Dsui_2510 at 2659.183 kb on - strand, within Dsui_2510 at 2659.184 kb on - strand, within Dsui_2510 at 2659.195 kb on - strand, within Dsui_2510 at 2659.221 kb on + strand, within Dsui_2510 at 2659.325 kb on + strand, within Dsui_2510 at 2659.385 kb on + strand, within Dsui_2510 at 2659.418 kb on + strand, within Dsui_2510 at 2659.418 kb on + strand, within Dsui_2510 at 2659.426 kb on - strand, within Dsui_2510 at 2659.441 kb on + strand, within Dsui_2510 at 2659.481 kb on - strand, within Dsui_2510 at 2659.481 kb on - strand, within Dsui_2510 at 2659.497 kb on + strand, within Dsui_2510 at 2659.567 kb on + strand, within Dsui_2510 at 2659.609 kb on - strand, within Dsui_2510 at 2659.630 kb on + strand, within Dsui_2510 at 2659.802 kb on + strand, within Dsui_2510 at 2659.825 kb on + strand, within Dsui_2510 at 2659.843 kb on - strand, within Dsui_2510 at 2659.903 kb on + strand, within Dsui_2510 at 2659.961 kb on + strand, within Dsui_2510 at 2660.047 kb on - strand at 2660.086 kb on + strand at 2660.169 kb on + strand at 2660.183 kb on - strand at 2660.200 kb on + strand at 2660.233 kb on - strand at 2660.243 kb on + strand at 2660.335 kb on + strand at 2660.343 kb on - strand at 2660.343 kb on - strand at 2660.343 kb on - strand at 2660.457 kb on - strand, within Dsui_2511 at 2660.477 kb on + strand, within Dsui_2511 at 2660.490 kb on - strand, within Dsui_2511 at 2660.585 kb on + strand, within Dsui_2511 at 2660.715 kb on + strand, within Dsui_2511 at 2660.730 kb on + strand, within Dsui_2511 at 2660.749 kb on - strand, within Dsui_2511 at 2660.765 kb on - strand, within Dsui_2511 at 2660.770 kb on + strand, within Dsui_2511 at 2660.860 kb on - strand, within Dsui_2511 at 2660.924 kb on + strand at 2660.952 kb on - strand at 2660.981 kb on + strand at 2661.062 kb on + strand at 2661.073 kb on + strand at 2661.073 kb on + strand at 2661.073 kb on + strand at 2661.073 kb on + strand at 2661.075 kb on - strand at 2661.148 kb on - strand, within Dsui_2512 at 2661.293 kb on + strand, within Dsui_2512 at 2661.301 kb on - strand, within Dsui_2512
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml remove 2,656,250 + -1.2 2,656,348 - Dsui_2509 0.18 -0.8 2,656,432 + Dsui_2509 0.26 +0.8 2,656,462 - Dsui_2509 0.29 +0.1 2,656,462 - Dsui_2509 0.29 -1.2 2,656,468 + Dsui_2509 0.29 +0.8 2,656,495 - Dsui_2509 0.32 -0.2 2,656,683 + Dsui_2509 0.49 +0.8 2,656,755 + Dsui_2509 0.56 +0.8 2,656,763 - Dsui_2509 0.57 +0.8 2,656,770 - Dsui_2509 0.58 +0.8 2,656,817 + Dsui_2509 0.62 +0.8 2,656,823 - Dsui_2509 0.63 +0.8 2,656,825 - Dsui_2509 0.63 +0.8 2,656,944 + Dsui_2509 0.74 -1.2 2,656,974 - Dsui_2509 0.77 -0.8 2,657,001 + Dsui_2509 0.79 +0.8 2,657,016 + Dsui_2509 0.81 +0.8 2,657,038 - Dsui_2509 0.83 +0.8 2,657,074 - Dsui_2509 0.86 +0.8 2,657,096 + Dsui_2509 0.88 -0.8 2,657,179 + +0.8 2,657,187 - -0.2 2,657,189 + -0.8 2,657,197 - -0.2 2,657,197 - +0.8 2,657,394 - +0.8 2,657,649 + Dsui_2510 0.13 -0.2 2,657,930 - Dsui_2510 0.23 -0.2 2,658,008 - Dsui_2510 0.25 -1.6 2,658,038 + Dsui_2510 0.26 +0.8 2,658,114 - Dsui_2510 0.28 -0.2 2,658,142 - Dsui_2510 0.29 +0.8 2,658,158 + Dsui_2510 0.30 +0.8 2,658,158 + Dsui_2510 0.30 +0.8 2,658,204 - Dsui_2510 0.31 -1.6 2,658,209 - Dsui_2510 0.32 +0.8 2,658,214 - Dsui_2510 0.32 +0.8 2,658,497 + Dsui_2510 0.41 +0.8 2,658,522 - Dsui_2510 0.42 -0.2 2,658,559 + Dsui_2510 0.43 +0.8 2,658,567 - Dsui_2510 0.43 +0.5 2,658,681 - Dsui_2510 0.47 -1.7 2,658,689 - Dsui_2510 0.47 -0.6 2,658,717 + Dsui_2510 0.48 +0.8 2,658,772 - Dsui_2510 0.50 +0.8 2,658,799 + Dsui_2510 0.51 -0.8 2,658,809 + Dsui_2510 0.51 -0.8 2,658,812 - Dsui_2510 0.51 -0.2 2,658,817 - Dsui_2510 0.51 +0.8 2,658,882 - Dsui_2510 0.53 -0.8 2,658,995 + Dsui_2510 0.57 -0.8 2,659,002 + Dsui_2510 0.57 +0.8 2,659,013 + Dsui_2510 0.58 -1.8 2,659,110 + Dsui_2510 0.61 -0.2 2,659,183 - Dsui_2510 0.63 -0.3 2,659,184 - Dsui_2510 0.63 -0.2 2,659,195 - Dsui_2510 0.63 -0.2 2,659,221 + Dsui_2510 0.64 +0.8 2,659,325 + Dsui_2510 0.68 +0.8 2,659,385 + Dsui_2510 0.70 +0.8 2,659,418 + Dsui_2510 0.71 -0.2 2,659,418 + Dsui_2510 0.71 +0.8 2,659,426 - Dsui_2510 0.71 -0.2 2,659,441 + Dsui_2510 0.71 -0.8 2,659,481 - Dsui_2510 0.73 +0.8 2,659,481 - Dsui_2510 0.73 +0.8 2,659,497 + Dsui_2510 0.73 -0.8 2,659,567 + Dsui_2510 0.76 -0.8 2,659,609 - Dsui_2510 0.77 -0.8 2,659,630 + Dsui_2510 0.78 -2.1 2,659,802 + Dsui_2510 0.83 +0.8 2,659,825 + Dsui_2510 0.84 -1.2 2,659,843 - Dsui_2510 0.84 -0.2 2,659,903 + Dsui_2510 0.86 +0.8 2,659,961 + Dsui_2510 0.88 +0.8 2,660,047 - +0.8 2,660,086 + -0.8 2,660,169 + -0.2 2,660,183 - -0.2 2,660,200 + -0.8 2,660,233 - -0.8 2,660,243 + -0.8 2,660,335 + -1.2 2,660,343 - -0.6 2,660,343 - -0.4 2,660,343 - -0.3 2,660,457 - Dsui_2511 0.20 -3.3 2,660,477 + Dsui_2511 0.23 +0.8 2,660,490 - Dsui_2511 0.25 +0.8 2,660,585 + Dsui_2511 0.40 +0.8 2,660,715 + Dsui_2511 0.61 +0.8 2,660,730 + Dsui_2511 0.63 +0.8 2,660,749 - Dsui_2511 0.66 +2.3 2,660,765 - Dsui_2511 0.68 -2.1 2,660,770 + Dsui_2511 0.69 -0.2 2,660,860 - Dsui_2511 0.83 +1.2 2,660,924 + -1.6 2,660,952 - +0.4 2,660,981 + +0.8 2,661,062 + +0.8 2,661,073 + +0.8 2,661,073 + +0.8 2,661,073 + +0.8 2,661,073 + -0.2 2,661,075 - -0.8 2,661,148 - Dsui_2512 0.12 +0.8 2,661,293 + Dsui_2512 0.20 -0.2 2,661,301 - Dsui_2512 0.20 +0.2
Or see this region's nucleotide sequence