Experiment: ALP with Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2122 and Dsui_2123 are separated by 135 nucleotides Dsui_2123 and Dsui_2124 are separated by 326 nucleotides
Dsui_2122: Dsui_2122 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 2,247,724 to 2,248,770
_2122
Dsui_2123: Dsui_2123 - EAL domain-containing protein, at 2,248,906 to 2,249,853
_2123
Dsui_2124: Dsui_2124 - methyl-accepting chemotaxis protein, at 2,250,180 to 2,251,283
_2124
Position (kb)
2248
2249
2250 Strain fitness (log2 ratio)
-2
-1
0
1 at 2247.920 kb on - strand, within Dsui_2122 at 2247.930 kb on + strand, within Dsui_2122 at 2247.930 kb on + strand, within Dsui_2122 at 2247.938 kb on - strand at 2248.018 kb on + strand at 2248.033 kb on + strand at 2248.040 kb on + strand, within Dsui_2122 at 2248.130 kb on + strand, within Dsui_2122 at 2248.138 kb on - strand, within Dsui_2122 at 2248.166 kb on - strand at 2248.201 kb on + strand, within Dsui_2122 at 2248.209 kb on - strand, within Dsui_2122 at 2248.219 kb on - strand at 2248.235 kb on + strand, within Dsui_2122 at 2248.278 kb on - strand at 2248.303 kb on - strand at 2248.412 kb on - strand, within Dsui_2122 at 2248.483 kb on - strand at 2248.508 kb on + strand, within Dsui_2122 at 2248.651 kb on - strand at 2248.670 kb on - strand at 2249.022 kb on + strand at 2249.159 kb on - strand at 2249.245 kb on + strand at 2249.258 kb on - strand, within Dsui_2123 at 2249.351 kb on + strand at 2249.507 kb on - strand, within Dsui_2123 at 2249.601 kb on - strand at 2249.664 kb on - strand, within Dsui_2123 at 2249.774 kb on - strand at 2249.931 kb on - strand at 2250.257 kb on + strand at 2250.333 kb on + strand at 2250.761 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml remove 2,247,920 - Dsui_2122 0.19 -0.5 2,247,930 + Dsui_2122 0.20 -0.5 2,247,930 + Dsui_2122 0.20 -0.5 2,247,938 - +1.1 2,248,018 + -0.5 2,248,033 + +1.1 2,248,040 + Dsui_2122 0.30 -0.9 2,248,130 + Dsui_2122 0.39 +0.1 2,248,138 - Dsui_2122 0.40 +0.1 2,248,166 - +1.1 2,248,201 + Dsui_2122 0.46 +1.1 2,248,209 - Dsui_2122 0.46 -0.9 2,248,219 - +0.1 2,248,235 + Dsui_2122 0.49 -0.5 2,248,278 - +1.1 2,248,303 - +1.1 2,248,412 - Dsui_2122 0.66 +1.1 2,248,483 - +1.1 2,248,508 + Dsui_2122 0.75 -0.5 2,248,651 - +0.1 2,248,670 - +1.1 2,249,022 + +0.1 2,249,159 - +1.1 2,249,245 + +1.1 2,249,258 - Dsui_2123 0.37 -1.9 2,249,351 + -0.5 2,249,507 - Dsui_2123 0.63 -0.5 2,249,601 - +1.1 2,249,664 - Dsui_2123 0.80 -0.9 2,249,774 - +0.1 2,249,931 - -0.5 2,250,257 + +0.1 2,250,333 + +1.1 2,250,761 + +0.1
Or see this region's nucleotide sequence