Experiment: ALP with Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2001 and Dsui_2002 are separated by 11 nucleotides Dsui_2002 and Dsui_2003 are separated by 302 nucleotides
Dsui_2001: Dsui_2001 - hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily, at 2,107,652 to 2,109,184
_2001
Dsui_2002: Dsui_2002 - TIGR00645 family protein, at 2,109,196 to 2,109,720
_2002
Dsui_2003: Dsui_2003 - acetate--CoA ligase, at 2,110,023 to 2,111,999
_2003
Position (kb)
2109
2110 Strain fitness (log2 ratio)
-2
-1
0
1 at 2109.202 kb on - strand at 2109.207 kb on - strand at 2109.214 kb on - strand at 2109.214 kb on - strand at 2109.221 kb on - strand at 2109.306 kb on - strand, within Dsui_2002 at 2109.338 kb on + strand at 2109.346 kb on - strand, within Dsui_2002 at 2109.559 kb on - strand, within Dsui_2002 at 2109.581 kb on + strand, within Dsui_2002 at 2109.592 kb on + strand, within Dsui_2002 at 2109.642 kb on + strand at 2109.642 kb on + strand at 2109.642 kb on + strand, within Dsui_2002 at 2109.650 kb on - strand, within Dsui_2002 at 2109.650 kb on - strand, within Dsui_2002 at 2109.655 kb on - strand, within Dsui_2002 at 2109.684 kb on - strand at 2109.747 kb on - strand at 2109.756 kb on - strand at 2109.814 kb on + strand at 2109.814 kb on + strand at 2109.833 kb on + strand at 2109.833 kb on + strand at 2109.841 kb on - strand at 2109.841 kb on - strand at 2109.872 kb on + strand at 2109.892 kb on + strand at 2109.903 kb on + strand at 2109.961 kb on - strand at 2110.004 kb on + strand at 2110.006 kb on + strand at 2110.006 kb on + strand at 2110.011 kb on + strand at 2110.019 kb on + strand at 2110.031 kb on + strand at 2110.039 kb on - strand at 2110.059 kb on + strand at 2110.096 kb on - strand at 2110.099 kb on + strand at 2110.127 kb on + strand at 2110.199 kb on + strand at 2110.217 kb on + strand at 2110.261 kb on + strand, within Dsui_2003 at 2110.303 kb on - strand, within Dsui_2003 at 2110.320 kb on + strand, within Dsui_2003 at 2110.369 kb on + strand, within Dsui_2003 at 2110.374 kb on + strand, within Dsui_2003 at 2110.385 kb on - strand, within Dsui_2003 at 2110.387 kb on - strand, within Dsui_2003 at 2110.395 kb on + strand, within Dsui_2003 at 2110.485 kb on + strand, within Dsui_2003 at 2110.502 kb on + strand, within Dsui_2003 at 2110.607 kb on + strand, within Dsui_2003 at 2110.640 kb on - strand, within Dsui_2003 at 2110.653 kb on + strand, within Dsui_2003 at 2110.661 kb on - strand, within Dsui_2003 at 2110.661 kb on - strand, within Dsui_2003
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml remove 2,109,202 - +1.0 2,109,207 - -0.1 2,109,214 - +0.5 2,109,214 - -0.3 2,109,221 - +0.7 2,109,306 - Dsui_2002 0.21 -0.1 2,109,338 + +1.2 2,109,346 - Dsui_2002 0.29 +0.0 2,109,559 - Dsui_2002 0.69 +0.2 2,109,581 + Dsui_2002 0.73 +1.2 2,109,592 + Dsui_2002 0.75 +1.2 2,109,642 + -0.8 2,109,642 + +1.2 2,109,642 + Dsui_2002 0.85 -0.4 2,109,650 - Dsui_2002 0.86 -0.2 2,109,650 - Dsui_2002 0.86 -0.2 2,109,655 - Dsui_2002 0.87 -0.1 2,109,684 - +0.5 2,109,747 - -1.3 2,109,756 - +0.4 2,109,814 + -0.8 2,109,814 + +1.2 2,109,833 + +1.2 2,109,833 + +1.2 2,109,841 - +1.2 2,109,841 - +0.2 2,109,872 + -0.8 2,109,892 + +0.5 2,109,903 + +1.2 2,109,961 - +0.2 2,110,004 + -2.2 2,110,006 + -2.0 2,110,006 + +1.2 2,110,011 + +1.2 2,110,019 + +1.2 2,110,031 + -0.2 2,110,039 - +1.2 2,110,059 + -1.0 2,110,096 - -2.0 2,110,099 + -0.1 2,110,127 + +0.3 2,110,199 + -0.2 2,110,217 + +0.7 2,110,261 + Dsui_2003 0.12 -0.4 2,110,303 - Dsui_2003 0.14 -0.8 2,110,320 + Dsui_2003 0.15 -1.3 2,110,369 + Dsui_2003 0.18 +0.8 2,110,374 + Dsui_2003 0.18 +0.5 2,110,385 - Dsui_2003 0.18 +1.2 2,110,387 - Dsui_2003 0.18 +0.2 2,110,395 + Dsui_2003 0.19 +1.7 2,110,485 + Dsui_2003 0.23 +0.9 2,110,502 + Dsui_2003 0.24 -0.1 2,110,607 + Dsui_2003 0.30 +0.2 2,110,640 - Dsui_2003 0.31 -1.4 2,110,653 + Dsui_2003 0.32 -0.5 2,110,661 - Dsui_2003 0.32 -1.7 2,110,661 - Dsui_2003 0.32 -2.0
Or see this region's nucleotide sequence