Strain Fitness in Dechlorosoma suillum PS around Dsui_2001

Experiment: ALP with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1999 and Dsui_2000 are separated by 26 nucleotidesDsui_2000 and Dsui_2001 are separated by 27 nucleotidesDsui_2001 and Dsui_2002 are separated by 11 nucleotidesDsui_2002 and Dsui_2003 are separated by 302 nucleotides Dsui_1999: Dsui_1999 - putative translation initiation inhibitor, yjgF family, at 2,106,486 to 2,106,830 _1999 Dsui_2000: Dsui_2000 - hypothetical protein, at 2,106,857 to 2,107,624 _2000 Dsui_2001: Dsui_2001 - hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily, at 2,107,652 to 2,109,184 _2001 Dsui_2002: Dsui_2002 - TIGR00645 family protein, at 2,109,196 to 2,109,720 _2002 Dsui_2003: Dsui_2003 - acetate--CoA ligase, at 2,110,023 to 2,111,999 _2003 Position (kb) 2107 2108 2109 2110Strain fitness (log2 ratio) -2 -1 0 1at 2106.687 kb on - strand, within Dsui_1999at 2106.714 kb on + strandat 2106.742 kb on + strand, within Dsui_1999at 2106.787 kb on - strand, within Dsui_1999at 2106.793 kb on - strand, within Dsui_1999at 2106.796 kb on - strandat 2106.854 kb on + strandat 2106.973 kb on - strand, within Dsui_2000at 2107.017 kb on - strand, within Dsui_2000at 2107.048 kb on + strand, within Dsui_2000at 2107.084 kb on + strand, within Dsui_2000at 2107.114 kb on - strand, within Dsui_2000at 2107.153 kb on + strand, within Dsui_2000at 2107.170 kb on - strand, within Dsui_2000at 2107.223 kb on + strandat 2107.239 kb on - strand, within Dsui_2000at 2107.290 kb on - strand, within Dsui_2000at 2107.435 kb on + strand, within Dsui_2000at 2107.443 kb on - strand, within Dsui_2000at 2107.495 kb on - strand, within Dsui_2000at 2107.658 kb on - strandat 2107.701 kb on - strandat 2107.716 kb on - strandat 2109.202 kb on - strandat 2109.207 kb on - strandat 2109.214 kb on - strandat 2109.214 kb on - strandat 2109.221 kb on - strandat 2109.306 kb on - strand, within Dsui_2002at 2109.338 kb on + strandat 2109.346 kb on - strand, within Dsui_2002at 2109.559 kb on - strand, within Dsui_2002at 2109.581 kb on + strand, within Dsui_2002at 2109.592 kb on + strand, within Dsui_2002at 2109.642 kb on + strandat 2109.642 kb on + strandat 2109.642 kb on + strand, within Dsui_2002at 2109.650 kb on - strand, within Dsui_2002at 2109.650 kb on - strand, within Dsui_2002at 2109.655 kb on - strand, within Dsui_2002at 2109.684 kb on - strandat 2109.747 kb on - strandat 2109.756 kb on - strandat 2109.814 kb on + strandat 2109.814 kb on + strandat 2109.833 kb on + strandat 2109.833 kb on + strandat 2109.841 kb on - strandat 2109.841 kb on - strandat 2109.872 kb on + strandat 2109.892 kb on + strandat 2109.903 kb on + strandat 2109.961 kb on - strandat 2110.004 kb on + strandat 2110.006 kb on + strandat 2110.006 kb on + strandat 2110.011 kb on + strandat 2110.019 kb on + strandat 2110.031 kb on + strandat 2110.039 kb on - strandat 2110.059 kb on + strandat 2110.096 kb on - strandat 2110.099 kb on + strandat 2110.127 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml
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2,106,687 - Dsui_1999 0.58 -0.3
2,106,714 + +1.2
2,106,742 + Dsui_1999 0.74 +1.2
2,106,787 - Dsui_1999 0.87 +0.2
2,106,793 - Dsui_1999 0.89 -0.4
2,106,796 - -0.8
2,106,854 + -1.8
2,106,973 - Dsui_2000 0.15 +0.3
2,107,017 - Dsui_2000 0.21 +0.2
2,107,048 + Dsui_2000 0.25 +0.2
2,107,084 + Dsui_2000 0.30 -2.0
2,107,114 - Dsui_2000 0.33 -0.7
2,107,153 + Dsui_2000 0.39 +1.2
2,107,170 - Dsui_2000 0.41 -0.1
2,107,223 + +1.2
2,107,239 - Dsui_2000 0.50 +0.6
2,107,290 - Dsui_2000 0.56 +0.1
2,107,435 + Dsui_2000 0.75 -0.8
2,107,443 - Dsui_2000 0.76 +0.4
2,107,495 - Dsui_2000 0.83 +0.4
2,107,658 - -0.8
2,107,701 - +0.6
2,107,716 - +0.3
2,109,202 - +1.0
2,109,207 - -0.1
2,109,214 - +0.5
2,109,214 - -0.3
2,109,221 - +0.7
2,109,306 - Dsui_2002 0.21 -0.1
2,109,338 + +1.2
2,109,346 - Dsui_2002 0.29 +0.0
2,109,559 - Dsui_2002 0.69 +0.2
2,109,581 + Dsui_2002 0.73 +1.2
2,109,592 + Dsui_2002 0.75 +1.2
2,109,642 + -0.8
2,109,642 + +1.2
2,109,642 + Dsui_2002 0.85 -0.4
2,109,650 - Dsui_2002 0.86 -0.2
2,109,650 - Dsui_2002 0.86 -0.2
2,109,655 - Dsui_2002 0.87 -0.1
2,109,684 - +0.5
2,109,747 - -1.3
2,109,756 - +0.4
2,109,814 + -0.8
2,109,814 + +1.2
2,109,833 + +1.2
2,109,833 + +1.2
2,109,841 - +1.2
2,109,841 - +0.2
2,109,872 + -0.8
2,109,892 + +0.5
2,109,903 + +1.2
2,109,961 - +0.2
2,110,004 + -2.2
2,110,006 + -2.0
2,110,006 + +1.2
2,110,011 + +1.2
2,110,019 + +1.2
2,110,031 + -0.2
2,110,039 - +1.2
2,110,059 + -1.0
2,110,096 - -2.0
2,110,099 + -0.1
2,110,127 + +0.3

Or see this region's nucleotide sequence