Experiment: ALP with Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1749 and Dsui_1750 are separated by 13 nucleotides Dsui_1750 and Dsui_1751 are separated by 64 nucleotides Dsui_1751 and Dsui_1752 are separated by 60 nucleotides Dsui_1752 and Dsui_1753 are separated by 49 nucleotides
Dsui_1749: Dsui_1749 - flagellar motor switch protein FliM, at 1,835,886 to 1,836,890
_1749
Dsui_1750: Dsui_1750 - flagellar basal body-associated protein, at 1,836,904 to 1,837,434
_1750
Dsui_1751: Dsui_1751 - flagellar hook-length control protein, at 1,837,499 to 1,838,620
_1751
Dsui_1752: Dsui_1752 - flagellar export protein FliJ, at 1,838,681 to 1,839,133
_1752
Dsui_1753: Dsui_1753 - flagellar protein export ATPase FliI, at 1,839,183 to 1,840,598
_1753
Position (kb)
1837
1838
1839 Strain fitness (log2 ratio)
-2
-1
0
1 at 1836.535 kb on - strand, within Dsui_1749 at 1836.543 kb on + strand, within Dsui_1749 at 1836.543 kb on + strand, within Dsui_1749 at 1836.543 kb on + strand, within Dsui_1749 at 1836.556 kb on - strand, within Dsui_1749 at 1836.556 kb on - strand, within Dsui_1749 at 1836.565 kb on + strand, within Dsui_1749 at 1836.589 kb on - strand, within Dsui_1749 at 1836.643 kb on - strand, within Dsui_1749 at 1836.679 kb on - strand, within Dsui_1749 at 1836.689 kb on - strand, within Dsui_1749 at 1836.725 kb on + strand, within Dsui_1749 at 1836.725 kb on + strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.766 kb on + strand, within Dsui_1749 at 1836.841 kb on + strand at 1836.841 kb on + strand at 1836.841 kb on + strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.879 kb on + strand at 1836.950 kb on + strand at 1836.957 kb on - strand, within Dsui_1750 at 1837.086 kb on + strand, within Dsui_1750 at 1837.132 kb on - strand, within Dsui_1750 at 1837.142 kb on - strand, within Dsui_1750 at 1837.177 kb on - strand, within Dsui_1750 at 1837.318 kb on - strand, within Dsui_1750 at 1837.432 kb on - strand at 1837.441 kb on - strand at 1837.444 kb on - strand at 1837.451 kb on - strand at 1837.496 kb on + strand at 1837.501 kb on + strand at 1837.513 kb on + strand at 1837.516 kb on - strand at 1837.517 kb on - strand at 1837.517 kb on - strand at 1837.591 kb on - strand at 1837.596 kb on - strand at 1837.630 kb on - strand, within Dsui_1751 at 1837.640 kb on - strand, within Dsui_1751 at 1837.681 kb on + strand at 1837.706 kb on - strand, within Dsui_1751 at 1837.718 kb on - strand, within Dsui_1751 at 1837.762 kb on + strand, within Dsui_1751 at 1837.765 kb on - strand, within Dsui_1751 at 1837.775 kb on - strand, within Dsui_1751 at 1837.787 kb on - strand, within Dsui_1751 at 1837.787 kb on - strand, within Dsui_1751 at 1837.820 kb on - strand, within Dsui_1751 at 1837.829 kb on - strand, within Dsui_1751 at 1837.829 kb on - strand, within Dsui_1751 at 1837.845 kb on - strand, within Dsui_1751 at 1837.927 kb on - strand, within Dsui_1751 at 1837.976 kb on + strand, within Dsui_1751 at 1838.061 kb on - strand, within Dsui_1751 at 1838.065 kb on + strand, within Dsui_1751 at 1838.132 kb on + strand, within Dsui_1751 at 1838.132 kb on + strand, within Dsui_1751 at 1838.167 kb on + strand, within Dsui_1751 at 1838.321 kb on + strand, within Dsui_1751 at 1838.322 kb on - strand, within Dsui_1751 at 1838.322 kb on - strand, within Dsui_1751 at 1838.322 kb on - strand, within Dsui_1751 at 1838.510 kb on + strand at 1838.605 kb on + strand at 1838.613 kb on - strand at 1838.613 kb on - strand at 1838.703 kb on + strand at 1838.850 kb on + strand at 1838.850 kb on + strand, within Dsui_1752 at 1838.948 kb on + strand, within Dsui_1752 at 1839.032 kb on - strand, within Dsui_1752 at 1839.147 kb on - strand at 1839.167 kb on - strand at 1839.241 kb on + strand at 1839.242 kb on + strand at 1839.250 kb on - strand at 1839.312 kb on - strand at 1839.347 kb on + strand at 1839.347 kb on + strand at 1839.347 kb on + strand, within Dsui_1753 at 1839.355 kb on - strand, within Dsui_1753 at 1839.378 kb on - strand, within Dsui_1753 at 1839.380 kb on + strand at 1839.397 kb on + strand, within Dsui_1753 at 1839.398 kb on - strand, within Dsui_1753 at 1839.407 kb on + strand, within Dsui_1753 at 1839.422 kb on + strand, within Dsui_1753 at 1839.430 kb on - strand, within Dsui_1753 at 1839.496 kb on - strand, within Dsui_1753 at 1839.531 kb on - strand, within Dsui_1753 at 1839.566 kb on + strand, within Dsui_1753 at 1839.577 kb on + strand, within Dsui_1753 at 1839.585 kb on - strand, within Dsui_1753
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml remove 1,836,535 - Dsui_1749 0.65 -0.3 1,836,543 + Dsui_1749 0.65 +0.7 1,836,543 + Dsui_1749 0.65 -1.3 1,836,543 + Dsui_1749 0.65 +0.7 1,836,556 - Dsui_1749 0.67 +0.9 1,836,556 - Dsui_1749 0.67 -0.5 1,836,565 + Dsui_1749 0.68 -0.9 1,836,589 - Dsui_1749 0.70 +0.1 1,836,643 - Dsui_1749 0.75 -0.6 1,836,679 - Dsui_1749 0.79 -0.1 1,836,689 - Dsui_1749 0.80 +0.0 1,836,725 + Dsui_1749 0.83 +0.7 1,836,725 + Dsui_1749 0.83 -1.6 1,836,733 - Dsui_1749 0.84 -0.1 1,836,733 - Dsui_1749 0.84 -0.7 1,836,733 - Dsui_1749 0.84 -0.3 1,836,733 - Dsui_1749 0.84 -0.3 1,836,733 - Dsui_1749 0.84 -0.0 1,836,733 - Dsui_1749 0.84 -0.0 1,836,733 - Dsui_1749 0.84 -0.2 1,836,766 + Dsui_1749 0.88 -0.3 1,836,841 + -1.6 1,836,841 + +0.7 1,836,841 + +0.7 1,836,849 - +0.1 1,836,849 - +0.0 1,836,849 - -0.3 1,836,849 - -0.1 1,836,849 - -0.0 1,836,849 - -0.1 1,836,849 - -0.2 1,836,879 + -1.6 1,836,950 + -0.9 1,836,957 - Dsui_1750 0.10 +0.3 1,837,086 + Dsui_1750 0.34 -0.9 1,837,132 - Dsui_1750 0.43 -0.2 1,837,142 - Dsui_1750 0.45 -0.4 1,837,177 - Dsui_1750 0.51 -0.3 1,837,318 - Dsui_1750 0.78 +0.3 1,837,432 - -0.1 1,837,441 - -0.3 1,837,444 - -0.4 1,837,451 - +0.4 1,837,496 + -0.9 1,837,501 + -0.3 1,837,513 + +0.7 1,837,516 - +0.1 1,837,517 - -0.3 1,837,517 - -0.2 1,837,591 - -1.6 1,837,596 - -1.6 1,837,630 - Dsui_1751 0.12 -1.6 1,837,640 - Dsui_1751 0.13 -0.3 1,837,681 + +0.7 1,837,706 - Dsui_1751 0.18 -2.5 1,837,718 - Dsui_1751 0.20 +0.7 1,837,762 + Dsui_1751 0.23 +0.7 1,837,765 - Dsui_1751 0.24 +0.7 1,837,775 - Dsui_1751 0.25 +0.7 1,837,787 - Dsui_1751 0.26 -0.9 1,837,787 - Dsui_1751 0.26 +0.7 1,837,820 - Dsui_1751 0.29 -0.3 1,837,829 - Dsui_1751 0.29 +0.7 1,837,829 - Dsui_1751 0.29 +0.7 1,837,845 - Dsui_1751 0.31 -0.3 1,837,927 - Dsui_1751 0.38 -1.3 1,837,976 + Dsui_1751 0.43 +0.7 1,838,061 - Dsui_1751 0.50 -0.3 1,838,065 + Dsui_1751 0.50 -0.3 1,838,132 + Dsui_1751 0.56 -0.3 1,838,132 + Dsui_1751 0.56 -0.3 1,838,167 + Dsui_1751 0.60 +0.7 1,838,321 + Dsui_1751 0.73 +0.7 1,838,322 - Dsui_1751 0.73 +0.7 1,838,322 - Dsui_1751 0.73 -1.9 1,838,322 - Dsui_1751 0.73 +0.7 1,838,510 + +0.7 1,838,605 + -0.3 1,838,613 - +0.7 1,838,613 - +0.7 1,838,703 + -1.3 1,838,850 + -0.9 1,838,850 + Dsui_1752 0.37 -0.3 1,838,948 + Dsui_1752 0.59 -0.3 1,839,032 - Dsui_1752 0.77 +0.7 1,839,147 - -0.5 1,839,167 - +0.9 1,839,241 + +0.7 1,839,242 + -0.9 1,839,250 - -0.3 1,839,312 - -2.1 1,839,347 + +0.7 1,839,347 + +0.7 1,839,347 + Dsui_1753 0.12 -0.9 1,839,355 - Dsui_1753 0.12 -1.8 1,839,378 - Dsui_1753 0.14 -0.5 1,839,380 + -0.9 1,839,397 + Dsui_1753 0.15 -1.3 1,839,398 - Dsui_1753 0.15 -0.4 1,839,407 + Dsui_1753 0.16 -1.3 1,839,422 + Dsui_1753 0.17 -1.6 1,839,430 - Dsui_1753 0.17 -1.2 1,839,496 - Dsui_1753 0.22 -0.6 1,839,531 - Dsui_1753 0.25 -0.3 1,839,566 + Dsui_1753 0.27 +0.7 1,839,577 + Dsui_1753 0.28 -1.3 1,839,585 - Dsui_1753 0.28 +0.9
Or see this region's nucleotide sequence