Strain Fitness in Dechlorosoma suillum PS around Dsui_1342

Experiment: ALP with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1339 and Dsui_1340 are separated by 101 nucleotidesDsui_1340 and Dsui_1341 are separated by 24 nucleotidesDsui_1341 and Dsui_1342 are separated by 44 nucleotidesDsui_1342 and Dsui_1343 are separated by 6 nucleotidesDsui_1343 and Dsui_1344 are separated by 127 nucleotides Dsui_1339: Dsui_1339 - 23S ribosomal RNA, at 1,395,608 to 1,398,489 _1339 Dsui_1340: Dsui_1340 - 5S ribosomal RNA, at 1,398,591 to 1,398,704 _1340 Dsui_1341: Dsui_1341 - methionine-S-sulfoxide reductase, at 1,398,729 to 1,399,430 _1341 Dsui_1342: Dsui_1342 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 1,399,475 to 1,399,819 _1342 Dsui_1343: Dsui_1343 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 1,399,826 to 1,400,659 _1343 Dsui_1344: Dsui_1344 - Zn-dependent hydrolase, glyoxylase, at 1,400,787 to 1,401,752 _1344 Position (kb) 1399 1400Strain fitness (log2 ratio) -3 -2 -1 0 1at 1398.805 kb on + strand, within Dsui_1341at 1398.805 kb on + strand, within Dsui_1341at 1398.805 kb on + strand, within Dsui_1341at 1398.805 kb on + strand, within Dsui_1341at 1398.818 kb on + strand, within Dsui_1341at 1398.849 kb on + strand, within Dsui_1341at 1398.870 kb on - strand, within Dsui_1341at 1398.885 kb on + strand, within Dsui_1341at 1398.903 kb on - strand, within Dsui_1341at 1398.918 kb on - strand, within Dsui_1341at 1398.960 kb on + strand, within Dsui_1341at 1399.000 kb on - strand, within Dsui_1341at 1399.010 kb on - strand, within Dsui_1341at 1399.055 kb on + strand, within Dsui_1341at 1399.055 kb on + strand, within Dsui_1341at 1399.055 kb on + strand, within Dsui_1341at 1399.063 kb on - strand, within Dsui_1341at 1399.069 kb on - strand, within Dsui_1341at 1399.129 kb on + strand, within Dsui_1341at 1399.129 kb on + strand, within Dsui_1341at 1399.136 kb on + strand, within Dsui_1341at 1399.136 kb on + strand, within Dsui_1341at 1399.137 kb on - strand, within Dsui_1341at 1399.144 kb on - strand, within Dsui_1341at 1399.158 kb on + strand, within Dsui_1341at 1399.166 kb on - strand, within Dsui_1341at 1399.181 kb on - strand, within Dsui_1341at 1399.188 kb on + strand, within Dsui_1341at 1399.188 kb on + strand, within Dsui_1341at 1399.188 kb on + strand, within Dsui_1341at 1399.227 kb on + strand, within Dsui_1341at 1399.240 kb on - strand, within Dsui_1341at 1399.244 kb on + strand, within Dsui_1341at 1399.301 kb on + strand, within Dsui_1341at 1399.307 kb on + strand, within Dsui_1341at 1399.347 kb on + strand, within Dsui_1341at 1399.354 kb on + strand, within Dsui_1341at 1399.365 kb on - strandat 1399.390 kb on + strandat 1399.415 kb on + strandat 1399.477 kb on - strandat 1399.482 kb on - strandat 1399.487 kb on - strandat 1399.499 kb on + strandat 1399.502 kb on - strandat 1399.507 kb on - strandat 1399.514 kb on + strand, within Dsui_1342at 1399.563 kb on - strand, within Dsui_1342at 1399.582 kb on + strand, within Dsui_1342at 1399.680 kb on - strand, within Dsui_1342at 1399.738 kb on - strand, within Dsui_1342at 1399.743 kb on - strand, within Dsui_1342at 1399.761 kb on + strand, within Dsui_1342at 1399.761 kb on + strand, within Dsui_1342at 1399.761 kb on + strand, within Dsui_1342at 1399.769 kb on - strand, within Dsui_1342at 1399.776 kb on + strand, within Dsui_1342at 1399.789 kb on - strandat 1399.831 kb on - strandat 1399.879 kb on + strandat 1399.887 kb on - strandat 1399.887 kb on - strandat 1399.919 kb on + strand, within Dsui_1343at 1399.919 kb on + strand, within Dsui_1343at 1399.920 kb on + strand, within Dsui_1343at 1399.924 kb on + strand, within Dsui_1343at 1399.926 kb on + strand, within Dsui_1343at 1399.927 kb on - strand, within Dsui_1343at 1399.927 kb on - strand, within Dsui_1343at 1399.932 kb on - strand, within Dsui_1343at 1399.953 kb on + strand, within Dsui_1343at 1399.961 kb on - strand, within Dsui_1343at 1399.961 kb on - strand, within Dsui_1343at 1399.961 kb on - strand, within Dsui_1343at 1399.963 kb on + strand, within Dsui_1343at 1399.971 kb on - strand, within Dsui_1343at 1400.006 kb on - strand, within Dsui_1343at 1400.014 kb on + strand, within Dsui_1343at 1400.070 kb on + strand, within Dsui_1343at 1400.109 kb on + strand, within Dsui_1343at 1400.111 kb on - strand, within Dsui_1343at 1400.111 kb on - strand, within Dsui_1343at 1400.116 kb on + strand, within Dsui_1343at 1400.117 kb on - strand, within Dsui_1343at 1400.169 kb on + strand, within Dsui_1343at 1400.203 kb on - strand, within Dsui_1343at 1400.239 kb on - strand, within Dsui_1343at 1400.282 kb on - strand, within Dsui_1343at 1400.290 kb on - strand, within Dsui_1343at 1400.292 kb on - strand, within Dsui_1343at 1400.367 kb on + strand, within Dsui_1343at 1400.375 kb on - strand, within Dsui_1343at 1400.375 kb on - strand, within Dsui_1343at 1400.386 kb on - strand, within Dsui_1343at 1400.395 kb on + strand, within Dsui_1343at 1400.403 kb on + strand, within Dsui_1343at 1400.403 kb on - strand, within Dsui_1343at 1400.520 kb on - strand, within Dsui_1343at 1400.523 kb on + strand, within Dsui_1343at 1400.560 kb on - strand, within Dsui_1343at 1400.562 kb on - strand, within Dsui_1343at 1400.574 kb on - strand, within Dsui_1343at 1400.659 kb on + strandat 1400.659 kb on + strandat 1400.659 kb on + strandat 1400.659 kb on + strandat 1400.661 kb on + strandat 1400.667 kb on - strandat 1400.687 kb on + strandat 1400.744 kb on - strandat 1400.752 kb on + strandat 1400.758 kb on + strandat 1400.773 kb on + strandat 1400.773 kb on + strandat 1400.775 kb on - strandat 1400.781 kb on - strandat 1400.789 kb on + strandat 1400.794 kb on + strandat 1400.814 kb on - strandat 1400.815 kb on + strandat 1400.815 kb on + strandat 1400.815 kb on + strandat 1400.815 kb on + strandat 1400.815 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml
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1,398,805 + Dsui_1341 0.11 -1.5
1,398,805 + Dsui_1341 0.11 -0.5
1,398,805 + Dsui_1341 0.11 -0.6
1,398,805 + Dsui_1341 0.11 -0.4
1,398,818 + Dsui_1341 0.13 -0.3
1,398,849 + Dsui_1341 0.17 -0.4
1,398,870 - Dsui_1341 0.20 -0.1
1,398,885 + Dsui_1341 0.22 -0.5
1,398,903 - Dsui_1341 0.25 -1.2
1,398,918 - Dsui_1341 0.27 +0.1
1,398,960 + Dsui_1341 0.33 -0.7
1,399,000 - Dsui_1341 0.39 -0.6
1,399,010 - Dsui_1341 0.40 -1.2
1,399,055 + Dsui_1341 0.46 -0.5
1,399,055 + Dsui_1341 0.46 -0.6
1,399,055 + Dsui_1341 0.46 +0.1
1,399,063 - Dsui_1341 0.48 -0.8
1,399,069 - Dsui_1341 0.48 +0.3
1,399,129 + Dsui_1341 0.57 -0.3
1,399,129 + Dsui_1341 0.57 -1.3
1,399,136 + Dsui_1341 0.58 -0.5
1,399,136 + Dsui_1341 0.58 -0.5
1,399,137 - Dsui_1341 0.58 -1.1
1,399,144 - Dsui_1341 0.59 -0.8
1,399,158 + Dsui_1341 0.61 -0.3
1,399,166 - Dsui_1341 0.62 -0.5
1,399,181 - Dsui_1341 0.64 -1.4
1,399,188 + Dsui_1341 0.65 -0.2
1,399,188 + Dsui_1341 0.65 -0.2
1,399,188 + Dsui_1341 0.65 -0.6
1,399,227 + Dsui_1341 0.71 -0.5
1,399,240 - Dsui_1341 0.73 -2.0
1,399,244 + Dsui_1341 0.73 -0.5
1,399,301 + Dsui_1341 0.81 -0.3
1,399,307 + Dsui_1341 0.82 -0.5
1,399,347 + Dsui_1341 0.88 -0.4
1,399,354 + Dsui_1341 0.89 -0.3
1,399,365 - -1.1
1,399,390 + +1.0
1,399,415 + -0.6
1,399,477 - +0.4
1,399,482 - -0.9
1,399,487 - -2.6
1,399,499 + -0.2
1,399,502 - -1.0
1,399,507 - -0.1
1,399,514 + Dsui_1342 0.11 -0.8
1,399,563 - Dsui_1342 0.26 -0.3
1,399,582 + Dsui_1342 0.31 -0.1
1,399,680 - Dsui_1342 0.59 -1.2
1,399,738 - Dsui_1342 0.76 -0.3
1,399,743 - Dsui_1342 0.78 -3.0
1,399,761 + Dsui_1342 0.83 -0.4
1,399,761 + Dsui_1342 0.83 -0.9
1,399,761 + Dsui_1342 0.83 -0.6
1,399,769 - Dsui_1342 0.85 -0.7
1,399,776 + Dsui_1342 0.87 -0.4
1,399,789 - -0.8
1,399,831 - -1.6
1,399,879 + -0.5
1,399,887 - -1.7
1,399,887 - +1.0
1,399,919 + Dsui_1343 0.11 -0.3
1,399,919 + Dsui_1343 0.11 -0.6
1,399,920 + Dsui_1343 0.11 -0.6
1,399,924 + Dsui_1343 0.12 -0.3
1,399,926 + Dsui_1343 0.12 -0.4
1,399,927 - Dsui_1343 0.12 -0.1
1,399,927 - Dsui_1343 0.12 -0.6
1,399,932 - Dsui_1343 0.13 -0.6
1,399,953 + Dsui_1343 0.15 -0.4
1,399,961 - Dsui_1343 0.16 -2.1
1,399,961 - Dsui_1343 0.16 +1.5
1,399,961 - Dsui_1343 0.16 -2.1
1,399,963 + Dsui_1343 0.16 -0.4
1,399,971 - Dsui_1343 0.17 -0.1
1,400,006 - Dsui_1343 0.22 +0.5
1,400,014 + Dsui_1343 0.23 -0.3
1,400,070 + Dsui_1343 0.29 -0.5
1,400,109 + Dsui_1343 0.34 -0.6
1,400,111 - Dsui_1343 0.34 +1.5
1,400,111 - Dsui_1343 0.34 +0.7
1,400,116 + Dsui_1343 0.35 -0.5
1,400,117 - Dsui_1343 0.35 -1.5
1,400,169 + Dsui_1343 0.41 -0.5
1,400,203 - Dsui_1343 0.45 -0.5
1,400,239 - Dsui_1343 0.50 -1.1
1,400,282 - Dsui_1343 0.55 -1.4
1,400,290 - Dsui_1343 0.56 -1.1
1,400,292 - Dsui_1343 0.56 -1.7
1,400,367 + Dsui_1343 0.65 -0.6
1,400,375 - Dsui_1343 0.66 -1.1
1,400,375 - Dsui_1343 0.66 -2.1
1,400,386 - Dsui_1343 0.67 -0.5
1,400,395 + Dsui_1343 0.68 -0.8
1,400,403 + Dsui_1343 0.69 -0.1
1,400,403 - Dsui_1343 0.69 -1.5
1,400,520 - Dsui_1343 0.83 +0.5
1,400,523 + Dsui_1343 0.84 -1.1
1,400,560 - Dsui_1343 0.88 -2.9
1,400,562 - Dsui_1343 0.88 -2.1
1,400,574 - Dsui_1343 0.90 -1.1
1,400,659 + -0.8
1,400,659 + +0.5
1,400,659 + -0.3
1,400,659 + -1.5
1,400,661 + -1.4
1,400,667 - -2.1
1,400,687 + -0.3
1,400,744 - -0.5
1,400,752 + -1.0
1,400,758 + -1.7
1,400,773 + +0.5
1,400,773 + -1.0
1,400,775 - -0.5
1,400,781 - -1.1
1,400,789 + -0.7
1,400,794 + +0.5
1,400,814 - -1.9
1,400,815 + -0.5
1,400,815 + -2.4
1,400,815 + -1.5
1,400,815 + -1.5
1,400,815 + -0.8

Or see this region's nucleotide sequence