Experiment: ALP with Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1216 and Dsui_1217 are separated by 64 nucleotides Dsui_1217 and Dsui_1218 are separated by 11 nucleotides Dsui_1218 and Dsui_1219 are separated by 56 nucleotides Dsui_1219 and Dsui_1220 are separated by 136 nucleotides
Dsui_1216: Dsui_1216 - ybaK/ebsC protein, at 1,272,629 to 1,273,135
_1216
Dsui_1217: Dsui_1217 - tyrosine recombinase XerD, at 1,273,200 to 1,274,123
_1217
Dsui_1218: Dsui_1218 - O-6-methylguanine DNA methyltransferase, at 1,274,135 to 1,274,623
_1218
Dsui_1219: Dsui_1219 - aspartyl-tRNA synthetase, at 1,274,680 to 1,275,261
_1219
Dsui_1220: Dsui_1220 - gamma-glutamyl phosphate reductase, at 1,275,398 to 1,276,654
_1220
Position (kb)
1274
1275 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1273.160 kb on - strand at 1273.258 kb on + strand at 1273.423 kb on + strand, within Dsui_1217 at 1273.533 kb on - strand, within Dsui_1217 at 1273.536 kb on + strand, within Dsui_1217 at 1273.558 kb on + strand, within Dsui_1217 at 1273.571 kb on + strand, within Dsui_1217 at 1273.636 kb on - strand, within Dsui_1217 at 1273.695 kb on - strand, within Dsui_1217 at 1273.770 kb on - strand, within Dsui_1217 at 1273.787 kb on - strand, within Dsui_1217 at 1273.864 kb on + strand at 1274.074 kb on + strand at 1274.315 kb on - strand, within Dsui_1218 at 1274.589 kb on + strand at 1274.589 kb on + strand at 1274.670 kb on + strand at 1274.678 kb on - strand at 1274.681 kb on + strand at 1274.725 kb on - strand at 1274.735 kb on - strand at 1274.762 kb on - strand, within Dsui_1219 at 1274.900 kb on + strand, within Dsui_1219 at 1274.996 kb on + strand, within Dsui_1219 at 1275.076 kb on + strand, within Dsui_1219 at 1275.089 kb on + strand, within Dsui_1219 at 1275.089 kb on + strand, within Dsui_1219 at 1275.150 kb on + strand, within Dsui_1219 at 1275.218 kb on + strand at 1275.309 kb on - strand at 1275.309 kb on - strand at 1275.309 kb on - strand at 1275.309 kb on - strand at 1275.319 kb on - strand at 1275.394 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml remove 1,273,160 - -0.5 1,273,258 + -1.8 1,273,423 + Dsui_1217 0.24 -1.5 1,273,533 - Dsui_1217 0.36 -0.8 1,273,536 + Dsui_1217 0.36 -3.7 1,273,558 + Dsui_1217 0.39 +0.5 1,273,571 + Dsui_1217 0.40 -0.5 1,273,636 - Dsui_1217 0.47 +0.3 1,273,695 - Dsui_1217 0.54 -2.1 1,273,770 - Dsui_1217 0.62 -2.0 1,273,787 - Dsui_1217 0.64 -1.5 1,273,864 + +0.5 1,274,074 + -1.1 1,274,315 - Dsui_1218 0.37 +0.9 1,274,589 + -1.8 1,274,589 + +0.5 1,274,670 + +0.5 1,274,678 - -0.0 1,274,681 + -1.5 1,274,725 - -0.5 1,274,735 - -0.1 1,274,762 - Dsui_1219 0.14 -0.4 1,274,900 + Dsui_1219 0.38 -0.8 1,274,996 + Dsui_1219 0.54 -0.5 1,275,076 + Dsui_1219 0.68 +0.5 1,275,089 + Dsui_1219 0.70 +0.5 1,275,089 + Dsui_1219 0.70 +0.5 1,275,150 + Dsui_1219 0.81 -1.1 1,275,218 + +0.5 1,275,309 - -0.3 1,275,309 - -0.3 1,275,309 - -0.4 1,275,309 - -0.4 1,275,319 - -0.3 1,275,394 + +0.5
Or see this region's nucleotide sequence