Strain Fitness in Dechlorosoma suillum PS around Dsui_1156

Experiment: ALP with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1155 and Dsui_1156 are separated by 51 nucleotidesDsui_1156 and Dsui_1157 are separated by 339 nucleotidesDsui_1157 and Dsui_1158 are separated by 86 nucleotides Dsui_1155: Dsui_1155 - methionyl-tRNA formyltransferase, at 1,210,620 to 1,212,353 _1155 Dsui_1156: Dsui_1156 - putative divalent heavy-metal cations transporter, at 1,212,405 to 1,213,310 _1156 Dsui_1157: Dsui_1157 - hypothetical protein, at 1,213,650 to 1,213,883 _1157 Dsui_1158: Dsui_1158 - hydrogenase expression/formation protein HypE, at 1,213,970 to 1,215,016 _1158 Position (kb) 1212 1213 1214Strain fitness (log2 ratio) -3 -2 -1 0 1at 1211.530 kb on + strand, within Dsui_1155at 1211.552 kb on + strand, within Dsui_1155at 1211.620 kb on + strand, within Dsui_1155at 1211.701 kb on + strand, within Dsui_1155at 1211.813 kb on - strand, within Dsui_1155at 1212.008 kb on - strand, within Dsui_1155at 1212.008 kb on - strand, within Dsui_1155at 1212.050 kb on + strandat 1212.079 kb on + strand, within Dsui_1155at 1212.084 kb on + strand, within Dsui_1155at 1212.092 kb on - strand, within Dsui_1155at 1212.142 kb on - strand, within Dsui_1155at 1212.163 kb on + strandat 1212.163 kb on + strand, within Dsui_1155at 1212.171 kb on - strand, within Dsui_1155at 1212.210 kb on - strandat 1212.227 kb on - strandat 1212.270 kb on + strandat 1212.271 kb on - strandat 1212.297 kb on - strandat 1212.310 kb on - strandat 1212.425 kb on + strandat 1212.431 kb on + strandat 1212.440 kb on - strandat 1212.714 kb on - strand, within Dsui_1156at 1212.714 kb on - strand, within Dsui_1156at 1212.721 kb on + strand, within Dsui_1156at 1212.726 kb on + strandat 1212.893 kb on - strand, within Dsui_1156at 1212.971 kb on - strand, within Dsui_1156at 1213.320 kb on - strandat 1213.325 kb on - strandat 1213.336 kb on + strandat 1213.336 kb on + strandat 1213.432 kb on - strandat 1213.432 kb on - strandat 1213.438 kb on - strandat 1213.438 kb on - strandat 1213.491 kb on - strandat 1213.557 kb on + strandat 1213.565 kb on - strandat 1213.633 kb on + strandat 1213.638 kb on - strandat 1213.653 kb on - strandat 1213.664 kb on - strandat 1213.671 kb on + strandat 1213.701 kb on - strand, within Dsui_1157at 1213.805 kb on + strand, within Dsui_1157at 1213.813 kb on - strand, within Dsui_1157at 1214.062 kb on - strandat 1214.156 kb on + strand, within Dsui_1158at 1214.183 kb on + strand, within Dsui_1158at 1214.183 kb on + strandat 1214.306 kb on - strand, within Dsui_1158at 1214.308 kb on + strand, within Dsui_1158

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml
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1,211,530 + Dsui_1155 0.52 +0.5
1,211,552 + Dsui_1155 0.54 -1.1
1,211,620 + Dsui_1155 0.58 -0.5
1,211,701 + Dsui_1155 0.62 -0.5
1,211,813 - Dsui_1155 0.69 -0.1
1,212,008 - Dsui_1155 0.80 -0.2
1,212,008 - Dsui_1155 0.80 -0.2
1,212,050 + -1.1
1,212,079 + Dsui_1155 0.84 -3.6
1,212,084 + Dsui_1155 0.84 -0.5
1,212,092 - Dsui_1155 0.85 -0.1
1,212,142 - Dsui_1155 0.88 -1.5
1,212,163 + -1.1
1,212,163 + Dsui_1155 0.89 -2.8
1,212,171 - Dsui_1155 0.89 -0.4
1,212,210 - -1.5
1,212,227 - -0.1
1,212,270 + +0.5
1,212,271 - -0.1
1,212,297 - -0.6
1,212,310 - -0.5
1,212,425 + +0.5
1,212,431 + +0.5
1,212,440 - +0.5
1,212,714 - Dsui_1156 0.34 +0.5
1,212,714 - Dsui_1156 0.34 -1.1
1,212,721 + Dsui_1156 0.35 -1.1
1,212,726 + +0.5
1,212,893 - Dsui_1156 0.54 -1.5
1,212,971 - Dsui_1156 0.62 -0.5
1,213,320 - -0.5
1,213,325 - -1.1
1,213,336 + -0.5
1,213,336 + -2.1
1,213,432 - -2.1
1,213,432 - +0.5
1,213,438 - -0.5
1,213,438 - +0.5
1,213,491 - -0.5
1,213,557 + -2.8
1,213,565 - +0.5
1,213,633 + -0.5
1,213,638 - -1.1
1,213,653 - +0.5
1,213,664 - -2.9
1,213,671 + +0.5
1,213,701 - Dsui_1157 0.22 -1.5
1,213,805 + Dsui_1157 0.66 +0.5
1,213,813 - Dsui_1157 0.70 +0.5
1,214,062 - -1.0
1,214,156 + Dsui_1158 0.18 +0.5
1,214,183 + Dsui_1158 0.20 +0.5
1,214,183 + +0.5
1,214,306 - Dsui_1158 0.32 -0.6
1,214,308 + Dsui_1158 0.32 -0.5

Or see this region's nucleotide sequence