Strain Fitness in Dechlorosoma suillum PS around Dsui_1137

Experiment: ALP with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1136 and Dsui_1137 overlap by 4 nucleotidesDsui_1137 and Dsui_1138 overlap by 4 nucleotidesDsui_1138 and Dsui_1139 overlap by 4 nucleotidesDsui_1139 and Dsui_1140 overlap by 4 nucleotides Dsui_1136: Dsui_1136 - hypothetical protein, at 1,189,325 to 1,190,263 _1136 Dsui_1137: Dsui_1137 - chromate transporter, chromate ion transporter family, at 1,190,260 to 1,191,624 _1137 Dsui_1138: Dsui_1138 - hypothetical protein, at 1,191,621 to 1,192,016 _1138 Dsui_1139: Dsui_1139 - hypothetical protein, at 1,192,013 to 1,192,468 _1139 Dsui_1140: Dsui_1140 - arabinose efflux permease family protein, at 1,192,465 to 1,193,676 _1140 Position (kb) 1190 1191 1192Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1189.260 kb on - strandat 1189.266 kb on + strandat 1189.315 kb on - strandat 1189.392 kb on + strandat 1189.398 kb on + strandat 1189.398 kb on + strandat 1189.398 kb on + strandat 1189.419 kb on - strand, within Dsui_1136at 1189.434 kb on + strand, within Dsui_1136at 1189.468 kb on + strand, within Dsui_1136at 1189.481 kb on - strand, within Dsui_1136at 1189.483 kb on - strand, within Dsui_1136at 1189.501 kb on - strand, within Dsui_1136at 1189.503 kb on - strand, within Dsui_1136at 1189.673 kb on - strand, within Dsui_1136at 1189.673 kb on - strand, within Dsui_1136at 1189.675 kb on + strand, within Dsui_1136at 1189.749 kb on + strand, within Dsui_1136at 1189.752 kb on - strand, within Dsui_1136at 1189.763 kb on - strand, within Dsui_1136at 1189.770 kb on - strand, within Dsui_1136at 1189.881 kb on - strand, within Dsui_1136at 1189.881 kb on - strand, within Dsui_1136at 1189.896 kb on + strand, within Dsui_1136at 1190.003 kb on + strand, within Dsui_1136at 1190.003 kb on + strand, within Dsui_1136at 1190.011 kb on - strand, within Dsui_1136at 1190.031 kb on + strand, within Dsui_1136at 1190.108 kb on + strand, within Dsui_1136at 1190.189 kb on + strandat 1190.202 kb on - strandat 1190.228 kb on + strandat 1190.236 kb on - strandat 1190.236 kb on - strandat 1190.257 kb on + strandat 1190.276 kb on - strandat 1190.279 kb on - strandat 1190.301 kb on + strandat 1190.301 kb on + strandat 1190.301 kb on + strandat 1190.317 kb on + strandat 1190.374 kb on - strandat 1190.420 kb on - strand, within Dsui_1137at 1190.456 kb on + strand, within Dsui_1137at 1190.500 kb on - strand, within Dsui_1137at 1190.535 kb on - strand, within Dsui_1137at 1190.540 kb on - strand, within Dsui_1137at 1190.540 kb on - strand, within Dsui_1137at 1190.606 kb on - strand, within Dsui_1137at 1190.612 kb on - strand, within Dsui_1137at 1190.623 kb on + strand, within Dsui_1137at 1190.654 kb on - strand, within Dsui_1137at 1190.858 kb on - strand, within Dsui_1137at 1191.032 kb on + strand, within Dsui_1137at 1191.032 kb on + strand, within Dsui_1137at 1191.032 kb on + strand, within Dsui_1137at 1191.032 kb on + strand, within Dsui_1137at 1191.032 kb on + strand, within Dsui_1137at 1191.040 kb on - strand, within Dsui_1137at 1191.111 kb on - strand, within Dsui_1137at 1191.202 kb on - strand, within Dsui_1137at 1191.246 kb on + strand, within Dsui_1137at 1191.267 kb on + strand, within Dsui_1137at 1191.287 kb on + strand, within Dsui_1137at 1191.332 kb on + strand, within Dsui_1137at 1191.382 kb on + strand, within Dsui_1137at 1191.431 kb on + strand, within Dsui_1137at 1191.431 kb on + strand, within Dsui_1137at 1191.439 kb on - strand, within Dsui_1137at 1191.461 kb on - strand, within Dsui_1137at 1191.524 kb on + strandat 1191.531 kb on - strandat 1191.541 kb on + strandat 1191.543 kb on - strandat 1191.657 kb on - strandat 1191.739 kb on - strand, within Dsui_1138at 1191.741 kb on - strandat 1191.743 kb on + strand, within Dsui_1138at 1191.773 kb on - strand, within Dsui_1138at 1191.793 kb on + strand, within Dsui_1138at 1191.796 kb on + strand, within Dsui_1138at 1191.804 kb on - strand, within Dsui_1138at 1191.856 kb on - strand, within Dsui_1138at 1191.927 kb on - strand, within Dsui_1138at 1191.960 kb on - strand, within Dsui_1138at 1191.973 kb on + strand, within Dsui_1138at 1192.026 kb on + strandat 1192.173 kb on + strand, within Dsui_1139at 1192.174 kb on - strand, within Dsui_1139at 1192.182 kb on - strand, within Dsui_1139at 1192.206 kb on + strand, within Dsui_1139at 1192.236 kb on - strand, within Dsui_1139at 1192.241 kb on - strand, within Dsui_1139at 1192.252 kb on + strand, within Dsui_1139at 1192.327 kb on - strand, within Dsui_1139at 1192.406 kb on + strand, within Dsui_1139at 1192.450 kb on + strandat 1192.501 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml
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1,189,260 - -1.4
1,189,266 + -0.3
1,189,315 - +0.6
1,189,392 + -0.3
1,189,398 + -0.3
1,189,398 + +0.1
1,189,398 + -0.2
1,189,419 - Dsui_1136 0.10 +0.6
1,189,434 + Dsui_1136 0.12 +0.6
1,189,468 + Dsui_1136 0.15 -0.4
1,189,481 - Dsui_1136 0.17 +0.6
1,189,483 - Dsui_1136 0.17 -1.0
1,189,501 - Dsui_1136 0.19 +0.6
1,189,503 - Dsui_1136 0.19 -1.0
1,189,673 - Dsui_1136 0.37 +0.6
1,189,673 - Dsui_1136 0.37 +0.6
1,189,675 + Dsui_1136 0.37 -0.3
1,189,749 + Dsui_1136 0.45 -0.3
1,189,752 - Dsui_1136 0.45 -0.4
1,189,763 - Dsui_1136 0.47 +0.6
1,189,770 - Dsui_1136 0.47 -1.0
1,189,881 - Dsui_1136 0.59 +0.6
1,189,881 - Dsui_1136 0.59 -1.0
1,189,896 + Dsui_1136 0.61 -0.1
1,190,003 + Dsui_1136 0.72 +0.1
1,190,003 + Dsui_1136 0.72 -0.3
1,190,011 - Dsui_1136 0.73 -0.4
1,190,031 + Dsui_1136 0.75 -0.3
1,190,108 + Dsui_1136 0.83 -0.5
1,190,189 + -0.2
1,190,202 - -0.4
1,190,228 + -0.3
1,190,236 - -1.4
1,190,236 - +0.6
1,190,257 + +0.6
1,190,276 - -1.0
1,190,279 - -2.9
1,190,301 + +0.6
1,190,301 + -0.4
1,190,301 + -1.8
1,190,317 + +0.7
1,190,374 - -0.4
1,190,420 - Dsui_1137 0.12 +0.6
1,190,456 + Dsui_1137 0.14 -0.4
1,190,500 - Dsui_1137 0.18 +0.6
1,190,535 - Dsui_1137 0.20 -1.0
1,190,540 - Dsui_1137 0.21 -0.4
1,190,540 - Dsui_1137 0.21 +0.6
1,190,606 - Dsui_1137 0.25 -0.4
1,190,612 - Dsui_1137 0.26 +0.6
1,190,623 + Dsui_1137 0.27 -1.0
1,190,654 - Dsui_1137 0.29 -1.8
1,190,858 - Dsui_1137 0.44 -1.4
1,191,032 + Dsui_1137 0.57 +0.6
1,191,032 + Dsui_1137 0.57 -2.9
1,191,032 + Dsui_1137 0.57 -0.4
1,191,032 + Dsui_1137 0.57 +0.6
1,191,032 + Dsui_1137 0.57 -0.0
1,191,040 - Dsui_1137 0.57 +0.6
1,191,111 - Dsui_1137 0.62 +0.6
1,191,202 - Dsui_1137 0.69 -1.0
1,191,246 + Dsui_1137 0.72 -0.4
1,191,267 + Dsui_1137 0.74 -1.8
1,191,287 + Dsui_1137 0.75 -1.5
1,191,332 + Dsui_1137 0.79 +0.6
1,191,382 + Dsui_1137 0.82 -0.4
1,191,431 + Dsui_1137 0.86 -0.6
1,191,431 + Dsui_1137 0.86 +0.3
1,191,439 - Dsui_1137 0.86 -1.4
1,191,461 - Dsui_1137 0.88 +0.6
1,191,524 + -1.0
1,191,531 - +0.6
1,191,541 + -2.2
1,191,543 - +0.6
1,191,657 - +0.6
1,191,739 - Dsui_1138 0.30 -2.0
1,191,741 - +0.6
1,191,743 + Dsui_1138 0.31 -1.4
1,191,773 - Dsui_1138 0.38 +0.6
1,191,793 + Dsui_1138 0.43 +0.6
1,191,796 + Dsui_1138 0.44 -0.4
1,191,804 - Dsui_1138 0.46 +0.6
1,191,856 - Dsui_1138 0.59 -0.4
1,191,927 - Dsui_1138 0.77 -1.4
1,191,960 - Dsui_1138 0.86 -0.4
1,191,973 + Dsui_1138 0.89 -1.0
1,192,026 + -0.4
1,192,173 + Dsui_1139 0.35 -0.4
1,192,174 - Dsui_1139 0.35 +0.6
1,192,182 - Dsui_1139 0.37 -0.4
1,192,206 + Dsui_1139 0.42 +1.6
1,192,236 - Dsui_1139 0.49 -1.0
1,192,241 - Dsui_1139 0.50 +0.6
1,192,252 + Dsui_1139 0.52 +0.6
1,192,327 - Dsui_1139 0.69 +0.6
1,192,406 + Dsui_1139 0.86 +1.9
1,192,450 + +1.6
1,192,501 - -1.0

Or see this region's nucleotide sequence