Strain Fitness in Dechlorosoma suillum PS around Dsui_1105

Experiment: ALP with Thallium(I) acetate 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1103 and Dsui_1104 are separated by 146 nucleotidesDsui_1104 and Dsui_1105 are separated by 64 nucleotidesDsui_1105 and Dsui_1106 are separated by 357 nucleotides Dsui_1103: Dsui_1103 - DNA-binding domain-containing protein, AraC-type, at 1,146,893 to 1,147,978 _1103 Dsui_1104: Dsui_1104 - putative thioesterase, at 1,148,125 to 1,148,586 _1104 Dsui_1105: Dsui_1105 - methylmalonyl-CoA mutase family protein, at 1,148,651 to 1,151,932 _1105 Dsui_1106: Dsui_1106 - nitroreductase, at 1,152,290 to 1,152,982 _1106 Position (kb) 1148 1149 1150 1151 1152Strain fitness (log2 ratio) -3 -2 -1 0 1at 1147.781 kb on - strand, within Dsui_1103at 1147.782 kb on - strand, within Dsui_1103at 1147.788 kb on + strandat 1147.873 kb on - strandat 1147.885 kb on + strandat 1147.885 kb on + strandat 1147.893 kb on - strandat 1147.916 kb on + strandat 1147.921 kb on + strandat 1147.973 kb on + strandat 1147.976 kb on - strandat 1147.981 kb on - strandat 1148.224 kb on + strand, within Dsui_1104at 1148.232 kb on - strand, within Dsui_1104at 1148.232 kb on - strand, within Dsui_1104at 1148.232 kb on - strand, within Dsui_1104at 1148.244 kb on + strand, within Dsui_1104at 1148.287 kb on - strandat 1148.344 kb on + strand, within Dsui_1104at 1148.405 kb on + strand, within Dsui_1104at 1148.424 kb on + strand, within Dsui_1104at 1148.438 kb on - strand, within Dsui_1104at 1148.708 kb on + strandat 1148.758 kb on - strandat 1148.787 kb on + strandat 1148.795 kb on - strandat 1148.843 kb on + strandat 1148.885 kb on - strandat 1148.950 kb on + strandat 1149.052 kb on + strand, within Dsui_1105at 1149.208 kb on + strand, within Dsui_1105at 1149.224 kb on - strand, within Dsui_1105at 1149.267 kb on + strand, within Dsui_1105at 1149.306 kb on + strand, within Dsui_1105at 1149.360 kb on + strand, within Dsui_1105at 1149.592 kb on - strand, within Dsui_1105at 1149.730 kb on + strand, within Dsui_1105at 1149.793 kb on + strand, within Dsui_1105at 1149.857 kb on + strand, within Dsui_1105at 1149.981 kb on + strandat 1149.989 kb on - strand, within Dsui_1105at 1150.077 kb on + strand, within Dsui_1105at 1150.211 kb on + strand, within Dsui_1105at 1150.211 kb on + strand, within Dsui_1105at 1150.211 kb on + strand, within Dsui_1105at 1150.217 kb on + strand, within Dsui_1105at 1150.219 kb on - strand, within Dsui_1105at 1150.219 kb on - strandat 1150.219 kb on - strandat 1150.424 kb on + strand, within Dsui_1105at 1150.529 kb on + strand, within Dsui_1105at 1150.539 kb on + strand, within Dsui_1105at 1150.554 kb on + strand, within Dsui_1105at 1150.568 kb on - strand, within Dsui_1105at 1150.650 kb on - strand, within Dsui_1105at 1150.668 kb on - strand, within Dsui_1105at 1150.698 kb on + strand, within Dsui_1105at 1150.706 kb on - strand, within Dsui_1105at 1150.807 kb on - strand, within Dsui_1105at 1150.852 kb on - strand, within Dsui_1105at 1150.857 kb on + strand, within Dsui_1105at 1150.962 kb on + strand, within Dsui_1105at 1151.031 kb on + strand, within Dsui_1105at 1151.049 kb on - strand, within Dsui_1105at 1151.074 kb on + strand, within Dsui_1105at 1151.168 kb on - strand, within Dsui_1105at 1151.176 kb on + strand, within Dsui_1105at 1151.442 kb on - strand, within Dsui_1105at 1151.484 kb on + strand, within Dsui_1105at 1151.584 kb on - strand, within Dsui_1105at 1151.611 kb on - strandat 1151.700 kb on - strandat 1151.724 kb on + strandat 1151.856 kb on - strandat 1151.871 kb on + strandat 1151.879 kb on - strandat 1151.910 kb on + strandat 1152.030 kb on + strandat 1152.032 kb on - strandat 1152.043 kb on - strandat 1152.058 kb on + strandat 1152.142 kb on + strandat 1152.173 kb on - strandat 1152.179 kb on - strandat 1152.212 kb on + strandat 1152.371 kb on + strand, within Dsui_1106at 1152.371 kb on + strandat 1152.376 kb on + strand, within Dsui_1106at 1152.379 kb on - strand, within Dsui_1106at 1152.379 kb on - strand, within Dsui_1106at 1152.379 kb on - strand, within Dsui_1106at 1152.379 kb on - strand, within Dsui_1106at 1152.496 kb on + strand, within Dsui_1106at 1152.496 kb on + strand, within Dsui_1106at 1152.566 kb on + strand, within Dsui_1106at 1152.754 kb on + strand, within Dsui_1106at 1152.838 kb on + strand, within Dsui_1106at 1152.883 kb on + strand, within Dsui_1106

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml
remove
1,147,781 - Dsui_1103 0.82 -0.0
1,147,782 - Dsui_1103 0.82 -0.1
1,147,788 + +0.7
1,147,873 - +0.5
1,147,885 + +0.7
1,147,885 + +0.7
1,147,893 - +0.0
1,147,916 + -0.3
1,147,921 + +0.7
1,147,973 + +0.7
1,147,976 - -0.5
1,147,981 - -2.1
1,148,224 + Dsui_1104 0.21 +0.7
1,148,232 - Dsui_1104 0.23 +0.7
1,148,232 - Dsui_1104 0.23 +0.7
1,148,232 - Dsui_1104 0.23 -1.9
1,148,244 + Dsui_1104 0.26 +0.7
1,148,287 - -1.3
1,148,344 + Dsui_1104 0.47 -0.9
1,148,405 + Dsui_1104 0.61 -0.3
1,148,424 + Dsui_1104 0.65 -2.1
1,148,438 - Dsui_1104 0.68 -0.9
1,148,708 + -0.9
1,148,758 - +0.7
1,148,787 + -0.9
1,148,795 - -1.7
1,148,843 + -0.9
1,148,885 - +0.7
1,148,950 + -0.3
1,149,052 + Dsui_1105 0.12 -1.7
1,149,208 + Dsui_1105 0.17 -1.3
1,149,224 - Dsui_1105 0.17 -0.9
1,149,267 + Dsui_1105 0.19 -0.9
1,149,306 + Dsui_1105 0.20 -1.3
1,149,360 + Dsui_1105 0.22 +0.7
1,149,592 - Dsui_1105 0.29 +0.7
1,149,730 + Dsui_1105 0.33 -0.9
1,149,793 + Dsui_1105 0.35 +0.7
1,149,857 + Dsui_1105 0.37 -2.8
1,149,981 + +0.7
1,149,989 - Dsui_1105 0.41 -1.9
1,150,077 + Dsui_1105 0.43 +0.7
1,150,211 + Dsui_1105 0.48 -0.3
1,150,211 + Dsui_1105 0.48 +0.7
1,150,211 + Dsui_1105 0.48 -2.1
1,150,217 + Dsui_1105 0.48 +0.7
1,150,219 - Dsui_1105 0.48 -0.3
1,150,219 - +0.7
1,150,219 - +0.7
1,150,424 + Dsui_1105 0.54 +0.7
1,150,529 + Dsui_1105 0.57 +0.7
1,150,539 + Dsui_1105 0.58 -2.5
1,150,554 + Dsui_1105 0.58 -2.8
1,150,568 - Dsui_1105 0.58 -1.7
1,150,650 - Dsui_1105 0.61 -1.7
1,150,668 - Dsui_1105 0.61 -2.8
1,150,698 + Dsui_1105 0.62 -1.9
1,150,706 - Dsui_1105 0.63 +0.7
1,150,807 - Dsui_1105 0.66 -1.3
1,150,852 - Dsui_1105 0.67 -0.3
1,150,857 + Dsui_1105 0.67 -0.3
1,150,962 + Dsui_1105 0.70 -0.9
1,151,031 + Dsui_1105 0.73 +0.7
1,151,049 - Dsui_1105 0.73 -0.9
1,151,074 + Dsui_1105 0.74 +0.7
1,151,168 - Dsui_1105 0.77 +0.7
1,151,176 + Dsui_1105 0.77 -0.3
1,151,442 - Dsui_1105 0.85 -1.3
1,151,484 + Dsui_1105 0.86 -0.9
1,151,584 - Dsui_1105 0.89 -0.9
1,151,611 - -1.7
1,151,700 - +0.7
1,151,724 + -1.3
1,151,856 - +0.7
1,151,871 + -0.9
1,151,879 - -0.3
1,151,910 + -2.1
1,152,030 + -2.0
1,152,032 - +0.7
1,152,043 - +0.7
1,152,058 + +0.7
1,152,142 + -1.3
1,152,173 - -1.7
1,152,179 - -2.1
1,152,212 + +0.7
1,152,371 + Dsui_1106 0.12 -0.9
1,152,371 + +0.7
1,152,376 + Dsui_1106 0.12 -1.3
1,152,379 - Dsui_1106 0.13 +0.1
1,152,379 - Dsui_1106 0.13 -0.3
1,152,379 - Dsui_1106 0.13 -0.2
1,152,379 - Dsui_1106 0.13 +0.2
1,152,496 + Dsui_1106 0.30 +0.7
1,152,496 + Dsui_1106 0.30 +0.7
1,152,566 + Dsui_1106 0.40 -0.3
1,152,754 + Dsui_1106 0.67 -0.3
1,152,838 + Dsui_1106 0.79 -0.3
1,152,883 + Dsui_1106 0.86 +0.7

Or see this region's nucleotide sequence