Experiment: ALP with Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0919 and Dsui_0920 overlap by 4 nucleotides Dsui_0920 and Dsui_0921 overlap by 4 nucleotides Dsui_0921 and Dsui_0922 are separated by 97 nucleotides
Dsui_0919: Dsui_0919 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 942,804 to 943,955
_0919
Dsui_0920: Dsui_0920 - fructose-2,6-bisphosphatase, at 943,952 to 944,620
_0920
Dsui_0921: Dsui_0921 - PAS domain S-box, at 944,617 to 948,909
_0921
Dsui_0922: Dsui_0922 - outer membrane receptor protein, at 949,007 to 951,028
_0922
Position (kb)
944
945
946
947
948
949 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 943.644 kb on + strand, within Dsui_0919 at 944.206 kb on + strand, within Dsui_0920 at 944.341 kb on + strand, within Dsui_0920 at 944.595 kb on + strand at 944.595 kb on + strand at 944.595 kb on + strand at 944.595 kb on + strand at 944.603 kb on - strand at 944.635 kb on + strand at 944.830 kb on - strand at 944.846 kb on - strand at 945.012 kb on + strand at 945.122 kb on + strand, within Dsui_0921 at 945.221 kb on + strand, within Dsui_0921 at 945.269 kb on + strand, within Dsui_0921 at 945.344 kb on + strand, within Dsui_0921 at 945.393 kb on + strand, within Dsui_0921 at 945.401 kb on - strand, within Dsui_0921 at 945.401 kb on - strand, within Dsui_0921 at 945.401 kb on - strand, within Dsui_0921 at 945.441 kb on + strand, within Dsui_0921 at 945.480 kb on + strand, within Dsui_0921 at 945.505 kb on - strand, within Dsui_0921 at 945.667 kb on + strand, within Dsui_0921 at 945.872 kb on + strand, within Dsui_0921 at 945.926 kb on + strand, within Dsui_0921 at 945.934 kb on - strand, within Dsui_0921 at 945.934 kb on - strand, within Dsui_0921 at 945.934 kb on - strand, within Dsui_0921 at 946.092 kb on - strand, within Dsui_0921 at 946.098 kb on + strand, within Dsui_0921 at 946.208 kb on + strand, within Dsui_0921 at 946.216 kb on - strand, within Dsui_0921 at 946.275 kb on - strand, within Dsui_0921 at 946.540 kb on + strand, within Dsui_0921 at 946.587 kb on - strand at 946.755 kb on - strand, within Dsui_0921 at 946.800 kb on + strand, within Dsui_0921 at 946.803 kb on + strand, within Dsui_0921 at 946.961 kb on + strand, within Dsui_0921 at 946.972 kb on + strand, within Dsui_0921 at 947.023 kb on - strand, within Dsui_0921 at 947.168 kb on + strand, within Dsui_0921 at 947.203 kb on + strand, within Dsui_0921 at 947.317 kb on + strand, within Dsui_0921 at 947.355 kb on - strand at 947.422 kb on - strand, within Dsui_0921 at 947.457 kb on - strand, within Dsui_0921 at 947.697 kb on - strand, within Dsui_0921 at 947.793 kb on - strand at 947.917 kb on + strand, within Dsui_0921 at 947.920 kb on - strand, within Dsui_0921 at 947.986 kb on - strand, within Dsui_0921 at 948.018 kb on + strand at 948.146 kb on - strand, within Dsui_0921 at 948.150 kb on + strand, within Dsui_0921 at 948.203 kb on - strand, within Dsui_0921 at 948.299 kb on + strand, within Dsui_0921 at 948.317 kb on - strand, within Dsui_0921 at 948.451 kb on + strand, within Dsui_0921 at 948.616 kb on + strand at 948.616 kb on + strand at 948.624 kb on - strand at 948.678 kb on + strand at 948.693 kb on - strand at 948.711 kb on - strand at 948.770 kb on + strand at 948.812 kb on + strand at 948.951 kb on + strand at 948.959 kb on - strand at 948.959 kb on - strand at 948.964 kb on - strand at 948.970 kb on + strand at 949.105 kb on - strand at 949.123 kb on - strand at 949.134 kb on - strand at 949.144 kb on - strand at 949.250 kb on - strand at 949.275 kb on - strand at 949.561 kb on + strand, within Dsui_0922 at 949.569 kb on - strand, within Dsui_0922 at 949.569 kb on - strand, within Dsui_0922 at 949.675 kb on + strand, within Dsui_0922 at 949.790 kb on - strand, within Dsui_0922 at 949.879 kb on + strand, within Dsui_0922 at 949.879 kb on + strand, within Dsui_0922 at 949.879 kb on + strand, within Dsui_0922 at 949.887 kb on - strand, within Dsui_0922 at 949.902 kb on - strand, within Dsui_0922
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml remove 943,644 + Dsui_0919 0.73 -1.3 944,206 + Dsui_0920 0.38 -0.8 944,341 + Dsui_0920 0.58 +0.7 944,595 + -1.1 944,595 + +0.7 944,595 + +0.7 944,595 + -0.3 944,603 - -1.3 944,635 + -0.3 944,830 - +0.7 944,846 - -0.3 945,012 + -0.8 945,122 + Dsui_0921 0.12 -0.9 945,221 + Dsui_0921 0.14 -0.4 945,269 + Dsui_0921 0.15 +0.7 945,344 + Dsui_0921 0.17 -1.1 945,393 + Dsui_0921 0.18 -1.8 945,401 - Dsui_0921 0.18 -2.1 945,401 - Dsui_0921 0.18 +0.7 945,401 - Dsui_0921 0.18 +0.7 945,441 + Dsui_0921 0.19 -0.8 945,480 + Dsui_0921 0.20 +0.7 945,505 - Dsui_0921 0.21 -0.3 945,667 + Dsui_0921 0.24 -0.8 945,872 + Dsui_0921 0.29 +0.7 945,926 + Dsui_0921 0.30 -2.1 945,934 - Dsui_0921 0.31 -0.8 945,934 - Dsui_0921 0.31 -1.6 945,934 - Dsui_0921 0.31 -1.8 946,092 - Dsui_0921 0.34 +0.7 946,098 + Dsui_0921 0.34 +0.7 946,208 + Dsui_0921 0.37 -1.5 946,216 - Dsui_0921 0.37 +0.7 946,275 - Dsui_0921 0.39 +0.7 946,540 + Dsui_0921 0.45 -0.8 946,587 - +0.7 946,755 - Dsui_0921 0.50 +0.7 946,800 + Dsui_0921 0.51 -0.6 946,803 + Dsui_0921 0.51 +0.3 946,961 + Dsui_0921 0.55 +0.7 946,972 + Dsui_0921 0.55 -0.3 947,023 - Dsui_0921 0.56 +0.7 947,168 + Dsui_0921 0.59 +0.7 947,203 + Dsui_0921 0.60 +0.7 947,317 + Dsui_0921 0.63 -0.3 947,355 - +0.7 947,422 - Dsui_0921 0.65 +0.7 947,457 - Dsui_0921 0.66 +0.7 947,697 - Dsui_0921 0.72 +0.7 947,793 - +0.7 947,917 + Dsui_0921 0.77 -1.3 947,920 - Dsui_0921 0.77 -1.8 947,986 - Dsui_0921 0.78 +0.7 948,018 + -0.3 948,146 - Dsui_0921 0.82 +0.7 948,150 + Dsui_0921 0.82 -2.1 948,203 - Dsui_0921 0.84 -0.3 948,299 + Dsui_0921 0.86 -2.1 948,317 - Dsui_0921 0.86 -1.3 948,451 + Dsui_0921 0.89 -0.8 948,616 + -1.2 948,616 + +0.2 948,624 - -1.8 948,678 + +0.8 948,693 - +0.8 948,711 - +0.8 948,770 + +0.8 948,812 + -0.8 948,951 + -1.2 948,959 - +0.8 948,959 - +0.8 948,964 - +0.8 948,970 + +0.8 949,105 - -0.2 949,123 - +0.8 949,134 - -1.2 949,144 - +0.8 949,250 - +0.8 949,275 - +0.8 949,561 + Dsui_0922 0.27 -1.2 949,569 - Dsui_0922 0.28 +0.8 949,569 - Dsui_0922 0.28 +0.8 949,675 + Dsui_0922 0.33 -0.8 949,790 - Dsui_0922 0.39 +1.8 949,879 + Dsui_0922 0.43 +0.8 949,879 + Dsui_0922 0.43 +0.8 949,879 + Dsui_0922 0.43 +0.8 949,887 - Dsui_0922 0.44 -0.2 949,902 - Dsui_0922 0.44 -0.2
Or see this region's nucleotide sequence