Experiment: ALP with Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0558 and Dsui_0559 are separated by 180 nucleotides Dsui_0559 and Dsui_0560 are separated by 365 nucleotides
Dsui_0558: Dsui_0558 - tetratricopeptide repeat protein, at 558,525 to 559,973
_0558
Dsui_0559: Dsui_0559 - alkylphosphonate utilization operon protein PhnA, at 560,154 to 560,495
_0559
Dsui_0560: Dsui_0560 - molybdenum-pterin binding domain protein, at 560,861 to 561,289
_0560
Position (kb) 560
561 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 559.172 kb on - strand, within Dsui_0558 at 559.224 kb on + strand, within Dsui_0558 at 559.284 kb on + strand, within Dsui_0558 at 559.321 kb on - strand, within Dsui_0558 at 559.362 kb on - strand, within Dsui_0558 at 559.368 kb on - strand, within Dsui_0558 at 559.535 kb on + strand at 559.543 kb on - strand at 559.593 kb on + strand at 559.601 kb on - strand at 559.651 kb on - strand at 559.651 kb on - strand at 559.674 kb on - strand at 559.705 kb on - strand, within Dsui_0558 at 559.901 kb on + strand at 559.903 kb on - strand at 559.970 kb on - strand at 560.050 kb on - strand at 560.052 kb on + strand at 560.073 kb on + strand at 560.115 kb on - strand at 560.152 kb on + strand at 560.160 kb on - strand at 560.160 kb on - strand at 560.183 kb on - strand at 560.206 kb on - strand, within Dsui_0559 at 560.250 kb on - strand, within Dsui_0559 at 560.287 kb on + strand, within Dsui_0559 at 560.287 kb on + strand, within Dsui_0559 at 560.295 kb on - strand, within Dsui_0559 at 560.372 kb on - strand, within Dsui_0559 at 560.403 kb on - strand, within Dsui_0559 at 560.486 kb on + strand at 560.494 kb on - strand at 560.494 kb on - strand at 560.499 kb on + strand at 560.499 kb on - strand at 560.615 kb on - strand at 560.656 kb on + strand at 560.656 kb on + strand at 560.773 kb on + strand at 560.773 kb on + strand at 560.773 kb on + strand at 560.789 kb on - strand at 560.832 kb on + strand at 560.867 kb on - strand at 560.873 kb on + strand at 560.881 kb on - strand at 560.881 kb on - strand at 560.897 kb on + strand at 560.905 kb on - strand, within Dsui_0560 at 560.926 kb on - strand, within Dsui_0560 at 560.998 kb on - strand, within Dsui_0560 at 561.042 kb on + strand, within Dsui_0560 at 561.042 kb on + strand, within Dsui_0560 at 561.050 kb on - strand, within Dsui_0560 at 561.050 kb on - strand, within Dsui_0560 at 561.102 kb on - strand, within Dsui_0560 at 561.108 kb on + strand, within Dsui_0560 at 561.108 kb on + strand, within Dsui_0560 at 561.116 kb on - strand, within Dsui_0560 at 561.119 kb on + strand, within Dsui_0560 at 561.139 kb on + strand, within Dsui_0560 at 561.147 kb on - strand, within Dsui_0560 at 561.154 kb on + strand, within Dsui_0560 at 561.164 kb on + strand, within Dsui_0560 at 561.172 kb on - strand, within Dsui_0560 at 561.195 kb on - strand, within Dsui_0560 at 561.198 kb on - strand, within Dsui_0560 at 561.218 kb on - strand, within Dsui_0560 at 561.222 kb on + strand, within Dsui_0560 at 561.222 kb on + strand, within Dsui_0560 at 561.230 kb on - strand, within Dsui_0560 at 561.230 kb on - strand, within Dsui_0560 at 561.231 kb on + strand, within Dsui_0560 at 561.238 kb on + strand, within Dsui_0560 at 561.240 kb on - strand, within Dsui_0560 at 561.240 kb on - strand, within Dsui_0560 at 561.245 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.253 kb on - strand at 561.253 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.261 kb on - strand at 561.266 kb on + strand at 561.266 kb on + strand at 561.266 kb on + strand at 561.267 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.276 kb on + strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.281 kb on + strand at 561.281 kb on + strand at 561.281 kb on + strand at 561.284 kb on - strand at 561.287 kb on - strand at 561.288 kb on + strand at 561.288 kb on + strand at 561.289 kb on - strand at 561.289 kb on - strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.298 kb on - strand at 561.298 kb on - strand at 561.300 kb on + strand at 561.300 kb on + strand at 561.308 kb on - strand at 561.323 kb on - strand at 561.362 kb on - strand at 561.362 kb on - strand at 561.382 kb on - strand at 561.382 kb on - strand at 561.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml remove 559,172 - Dsui_0558 0.45 -0.5 559,224 + Dsui_0558 0.48 -1.1 559,284 + Dsui_0558 0.52 -2.5 559,321 - Dsui_0558 0.55 -0.5 559,362 - Dsui_0558 0.58 -2.1 559,368 - Dsui_0558 0.58 +0.5 559,535 + +0.5 559,543 - -0.5 559,593 + -0.5 559,601 - -0.5 559,651 - -0.5 559,651 - +0.5 559,674 - +0.5 559,705 - Dsui_0558 0.81 -1.5 559,901 + -1.1 559,903 - +0.5 559,970 - -1.1 560,050 - -1.5 560,052 + -2.3 560,073 + -0.5 560,115 - -0.3 560,152 + +0.5 560,160 - -0.3 560,160 - -2.1 560,183 - -0.6 560,206 - Dsui_0559 0.15 -1.8 560,250 - Dsui_0559 0.28 -0.3 560,287 + Dsui_0559 0.39 +0.5 560,287 + Dsui_0559 0.39 +0.5 560,295 - Dsui_0559 0.41 +0.3 560,372 - Dsui_0559 0.64 -0.5 560,403 - Dsui_0559 0.73 -0.5 560,486 + +0.5 560,494 - +0.1 560,494 - -0.3 560,499 + -0.5 560,499 - -0.5 560,615 - +0.5 560,656 + +0.5 560,656 + +1.1 560,773 + -0.5 560,773 + -0.5 560,773 + -1.5 560,789 - -1.1 560,832 + -0.5 560,867 - -2.1 560,873 + +0.5 560,881 - -0.4 560,881 - -0.2 560,897 + -2.1 560,905 - Dsui_0560 0.10 -0.2 560,926 - Dsui_0560 0.15 -0.3 560,998 - Dsui_0560 0.32 +0.0 561,042 + Dsui_0560 0.42 -1.5 561,042 + Dsui_0560 0.42 -0.5 561,050 - Dsui_0560 0.44 -0.3 561,050 - Dsui_0560 0.44 -0.2 561,102 - Dsui_0560 0.56 +0.1 561,108 + Dsui_0560 0.58 -0.5 561,108 + Dsui_0560 0.58 +0.5 561,116 - Dsui_0560 0.59 -0.9 561,119 + Dsui_0560 0.60 +0.5 561,139 + Dsui_0560 0.65 -1.5 561,147 - Dsui_0560 0.67 -0.4 561,154 + Dsui_0560 0.68 +0.5 561,164 + Dsui_0560 0.71 -1.8 561,172 - Dsui_0560 0.72 -0.0 561,195 - Dsui_0560 0.78 -0.5 561,198 - Dsui_0560 0.79 -0.3 561,218 - Dsui_0560 0.83 -0.3 561,222 + Dsui_0560 0.84 -0.5 561,222 + Dsui_0560 0.84 +0.5 561,230 - Dsui_0560 0.86 -0.0 561,230 - Dsui_0560 0.86 -0.3 561,231 + Dsui_0560 0.86 +0.5 561,238 + Dsui_0560 0.88 -1.1 561,240 - Dsui_0560 0.88 -0.2 561,240 - Dsui_0560 0.88 -0.7 561,245 + Dsui_0560 0.90 -0.5 561,246 + Dsui_0560 0.90 +0.5 561,246 + Dsui_0560 0.90 +0.5 561,246 + Dsui_0560 0.90 +0.5 561,246 + Dsui_0560 0.90 -0.5 561,246 + Dsui_0560 0.90 +0.5 561,253 - -0.1 561,253 - -0.3 561,254 - +0.1 561,254 - -0.4 561,254 - -0.5 561,254 - -0.3 561,254 - +0.8 561,254 - -0.2 561,261 - -0.0 561,266 + -1.8 561,266 + -1.5 561,266 + -0.5 561,267 + -1.1 561,268 + +0.5 561,268 + -0.5 561,268 + -1.1 561,268 + -1.1 561,268 + +0.5 561,268 + +0.5 561,268 + -1.1 561,274 - -0.1 561,274 - -0.2 561,274 - -0.1 561,274 - +0.6 561,274 - -0.2 561,274 - -0.4 561,274 - -0.5 561,274 - -0.2 561,276 + -1.1 561,276 - -0.5 561,276 - -0.0 561,276 - -0.5 561,276 - -0.3 561,276 - -0.6 561,276 - -0.6 561,276 - +0.2 561,276 - -0.2 561,276 - +0.2 561,276 - -0.6 561,276 - -1.1 561,281 + -2.5 561,281 + +0.5 561,281 + +0.5 561,284 - -3.0 561,287 - -0.5 561,288 + +0.5 561,288 + -0.5 561,289 - -0.5 561,289 - -0.5 561,290 + -0.8 561,290 + -0.6 561,290 + -0.5 561,290 + +0.9 561,290 + -1.3 561,290 + +1.5 561,298 - -1.1 561,298 - -1.8 561,300 + +0.5 561,300 + +0.5 561,308 - +0.5 561,323 - +0.5 561,362 - -0.9 561,362 - +0.1 561,382 - -0.4 561,382 - +0.5 561,438 + +0.5
Or see this region's nucleotide sequence